Gene detail information of Glyur001419s00035735.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G24320.1 | 4.00E-102 | Transducin/WD40 repeat-like superfamily protein |
| NR | XP_003522494.1 | 0 | PREDICTED: uncharacterized protein LOC100780979 isoform X1 [Glycine max] |
| COG | YP_007121051.1 | 2.00E-23 | WD40 repeat-containing protein [Microcoleus sp. PCC 7113] |
| Swissprot | tr|Q9LXN4|HIRA_ARATH | 1.00E-11 | Protein HIRA |
| trEMBL | tr|I1JY39|I1JY39_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA04G39290.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01419 | 34574 | 38335 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | DWD |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001419s00035735.1 | PF00400.27 | WD40 | 224 | 256 | 5.60E-10 |
| Glyur001419s00035735.1 | PF00400.27 | WD40 | 308 | 343 | 2.70E-08 |
| Glyur001419s00035735.1 | PF00400.27 | WD40 | 355 | 384 | 8.50E-07 |
| Glyur001419s00035735.1 | PF00400.27 | WD40 | 498 | 519 | 0.033 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.208 |
| SRR1783600 | control | 1.178 |
| SRR1783602 | moderate drought stress | 1.416 |
| SRR1811619 | moderate drought stress | 1.363 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.404 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5.134 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.145 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.131 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.262 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.121 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.436 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.442 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 11.288 |
| SRR2868004 | Drought Stress(Tissue:root) | 9.586 |
| SRR2967015 | Control (Tissue:root) | 13.024 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 3.158 |
| SRR9715740 | Leave | 6.965 |
| SRR9715741 | Leave | 2.982 |
| SRR9715739 | Root | 0.505 |
| SRR9715742 | Root | 3.093 |
| SRR9715743 | Root | 3.436 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.454 |
| SRR8749028 | MeJA induced 9h | 0.689 |
| SRR8749029 | MeJA induced 9h | 0.336 |
| SRR8749030 | Uninduced | 0.609 |
| SRR8749031 | Uninduced | 0.249 |
| SRR8749032 | Uninduced | 0.047 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 8.059 |
| SRR8400027 | Control-Root | 10.011 |