Gene detail information of Glyur001419s00035736.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G64660.13.00E-102CYS, MET, PRO, and GLY protein 2
NRXP_004502912.10PREDICTED: U-box domain-containing protein 27-like [Cicer arietinum]
COGYP_001958455.16.00E-08hypothetical protein Aasi_1435 [Candidatus Amoebophilus asiaticus 5a2]
Swissprottr|Q9FLF4|PUB27_ARATH2.00E-127U-box domain-containing protein 27
trEMBLtr|G7JAZ3|G7JAZ3_MEDTR0Plant U-box protein {ECO:0000313|EMBL:AES72815.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold014196147662735-


Gene family

Gene familysubfamily
Ubiquitin FamilyU_box


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

biological_process

GO:0016567  protein ubiquitination


molecular_function

GO:0004842  ubiquitin-protein transferase activity

GO:0005488  binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001419s00035736.1PF04564.10U-box12801.50E-17


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control1.546
SRR1783600control1.833
SRR1783602moderate drought stress2.956
SRR1811619moderate drought stress2.879

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain4.004
DRR006520Root Summer glycyrrhizin high producing strain4.033
DRR006521Root Winter glycyrrhizin high producing strain0.133
DRR006522Root Winter glycyrrhizin high producing strain0.115
DRR006523Root Summer glycyrrhizin low producing strain11.644
DRR006524Root Summer glycyrrhizin low producing strain12.495
DRR006525Leaf Summer glycyrrhizin high producing strain0.450
DRR006526Leaf Summer glycyrrhizin high producing strain0.441

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)2.149
SRR2868004Drought Stress(Tissue:root)4.896
SRR2967015Control (Tissue:root)7.262

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave1.314
SRR9715740Leave0.301
SRR9715741Leave0.829
SRR9715739Root1.400
SRR9715742Root1.523
SRR9715743Root1.429

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h19.696
SRR8749028MeJA induced 9h17.395
SRR8749029MeJA induced 9h8.642
SRR8749030Uninduced6.718
SRR8749031Uninduced1.645
SRR8749032Uninduced1.372

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root4.627
SRR8400027Control-Root7.293

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved