Gene detail information of Glyur001422s00031018.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G20330.10sterol methyltransferase 2
NRXP_003527489.10PREDICTED: 24-methylenesterol C-methyltransferase 2-like [Glycine max]
COGYP_001518834.11.00E-23cyclopropane-fatty-acyl-phospholipid synthase [Acaryochloris marina MBIC11017]
Swissprottr|Q39227|SMT2_ARATH024-methylenesterol C-methyltransferase 2
trEMBLtr|I1K7G0|I1K7G0_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA06G02330.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold014223772638814-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K08242E2.1.1.143 EC:2.1.1.143 Steroid biosynthesis map00100


Gene Ontology

biological_process

GO:0006694  steroid biosynthetic process

GO:0008152  metabolic process


molecular_function

GO:0008168  methyltransferase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001422s00031018.1PF08241.7Methyltransf_111282243.60E-21
Glyur001422s00031018.1PF08498.5Sterol_MT_C2933552.50E-14


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control141.113
SRR1783600control142.061
SRR1783602moderate drought stress143.621
SRR1811619moderate drought stress140.992

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain166.192
DRR006520Root Summer glycyrrhizin high producing strain159.497
DRR006521Root Winter glycyrrhizin high producing strain167.704
DRR006522Root Winter glycyrrhizin high producing strain162.255
DRR006523Root Summer glycyrrhizin low producing strain217.021
DRR006524Root Summer glycyrrhizin low producing strain218.215
DRR006525Leaf Summer glycyrrhizin high producing strain183.527
DRR006526Leaf Summer glycyrrhizin high producing strain177.419

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)323.315
SRR2868004Drought Stress(Tissue:root)299.182
SRR2967015Control (Tissue:root)313.983

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave162.744
SRR9715740Leave142.182
SRR9715741Leave147.894
SRR9715739Root438.524
SRR9715742Root300.214
SRR9715743Root300.909

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h254.110
SRR8749028MeJA induced 9h174.276
SRR8749029MeJA induced 9h256.351
SRR8749030Uninduced280.628
SRR8749031Uninduced84.239
SRR8749032Uninduced290.533

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root157.383
SRR8400027Control-Root196.517

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved