Gene detail information of Glyur001422s00031023.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G11880.13.00E-14Pyridoxal-dependent decarboxylase family protein
NRCAD91349.10ornithine decarboxylase [Glycine max]
COGYP_005433369.14.00E-71lysine/ornithine decarboxylase [Selenomonas ruminantium subsp. lactilytica TAM6421]
Swissprottr|P50134|DCOR_DATST0Ornithine decarboxylase
trEMBLtr|Q70MR6|Q70MR6_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA04G02230.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold014226984571152-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01581E4.1.1.17, ODC1, speC, speF EC:4.1.1.17 Arginine and proline metabolism map00330
Glutathione metabolismmap00480


Gene Ontology

biological_process

GO:0006596  polyamine biosynthetic process


molecular_function

GO:0003824  catalytic activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001422s00031023.1PF02784.11Orn_Arg_deC_N703027.40E-68
Glyur001422s00031023.1PF00278.17Orn_DAP_Arg_deC3064192.10E-28


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control155.344
SRR1783600control143.731
SRR1783602moderate drought stress58.963
SRR1811619moderate drought stress53.115

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain77.538
DRR006520Root Summer glycyrrhizin high producing strain76.499
DRR006521Root Winter glycyrrhizin high producing strain0.000
DRR006522Root Winter glycyrrhizin high producing strain0.000
DRR006523Root Summer glycyrrhizin low producing strain2.679
DRR006524Root Summer glycyrrhizin low producing strain2.926
DRR006525Leaf Summer glycyrrhizin high producing strain0.071
DRR006526Leaf Summer glycyrrhizin high producing strain0.071

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)481.012
SRR2868004Drought Stress(Tissue:root)136.271
SRR2967015Control (Tissue:root)141.601

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave44.383
SRR9715740Leave0.832
SRR9715741Leave9.918
SRR9715739Root1666.981
SRR9715742Root531.671
SRR9715743Root710.829

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h1.370
SRR8749028MeJA induced 9h0.152
SRR8749029MeJA induced 9h1.742
SRR8749030Uninduced0.452
SRR8749031Uninduced0.978
SRR8749032Uninduced10.365

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root407.899
SRR8400027Control-Root157.016

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved