Gene detail

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Gene detail information of Glyur001425s00026822.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G60130.2	4.00E-74	beta glucosidase 16
NR	KEH30287.1	1.09E-147	glycoside hydrolase family 1 protein [Medicago truncatula]
COG	YP_004449345.1	2.00E-53	beta-galactosidase [Haliscomenobacter hydrossis DSM 1100]
Swissprot	tr\|Q7XKV4\|BGL12_ORYSJ	8.00E-112	Beta-glucosidase 12 (Precursor)
trEMBL	tr\|A0A072UKP9\|A0A072UKP9_MEDTR	4.00E-148	Glycoside hydrolase family 1 protein {ECO:0000313\|EMBL:KEH30287.1}

Sequence

Transcript Sequence

>Glyur001425s00026822.1
ATGGGCATGAATTTATATCTCCTCTACCTTGGTGTCTTCACTCTTGTTACAATCACCGAANCTGTTTCGCCTACACATGTTGGCGTTGCTTCTCTAAACCGGAGCAGTTTCCCTGCAGGTTTCGTTTTTGGTACTGCCTCCTCATCCTACCAGTACGAAGGTGCTGCAAATAAAGGCGGCAGAGGACCAAGTGTATGGGATACCTTCACTCATGAATTCCCAGAAAATATATCGGATAGAAGCAATGGAGATGTAGCTGTTGATCAGTATCATCGCTATAAGCAGGCTTCTCAAAAAGGTTTGATAGGCATCACCTTAAATTCTCACTGGTTCATCCCGTTCTCAAATCACACATTAGATCAACGTGCTGCAAGACGTGCTCTTGATTTCATGTTTGGATGGTTTATGCATCCCCTGACAAGAGGACAGTATCCAAAAACCATGCGGTCTTTTGTGGGAGACAGATTACCAAAGTTCACTGAAGAGGAATCCAAGCTACTTACTGGCTCATTTGATTTTATTGGACTGAATTATTACACCGCTAATTACGCTGCCAATAAACCCCATCAAAAGAATGACACAAGCAAACCTACCTATCACAAGGATTCTCATGTCAATGTAACAACTGAGCGTAACGGGATACCAATTGGACCAAGGGCTGCTTCATTTTGGCTATATGTTTATCCCAAGGGGATTCGAGAACTATTGTTGTACACAAAGAAAAAGTACAACAACCCTTTGATTTACATAACAGAAAATGGTATGGATGAATTCAATGACCCAACACTAACACTTGAAGAGGCGCTCATGGATACATANAGAATTGATTACTTTTATCGTCATCTTTATTATATTTCACTTGCAATCAAGGATGGTGTGAAAGTAAAAGGATATTTTGCATGGTCACTTTTGGACAACTTTGAATGGCTTGCCGGCTACACCTTGCGTTTTGGACTTAACTTCGTTGATTACAAAGATAATCGGAAAAGACACCAAAAGCTCTCGGCCCACTGGTTTAGAAATTTTCTCAAAGAAAAATAG

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold01425	24509	29099	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GH1

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01188	E3.2.1.21	EC:3.2.1.21	Starch and sucrose metabolism	map00500
			Cyanoamino acid metabolism	map00460
			Phenylpropanoid biosynthesis	map00940

Gene Ontology

biological_process
GO:0005975 carbohydrate metabolic process

molecular_function GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001425s00026822.1	PF00232.13	Glyco_hydro_1	93	345	3.90E-71

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.099
SRR1783600	control	0.129
SRR1783602	moderate drought stress	0.000
SRR1811619	moderate drought stress	0.000

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.248
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.071

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	4.966
SRR2868004	Drought Stress(Tissue:root)	1.819
SRR2967015	Control (Tissue:root)	1.247

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	0.000
SRR9715740	Leave	0.000
SRR9715741	Leave	0.000
SRR9715739	Root	0.044
SRR9715742	Root	0.000
SRR9715743	Root	0.086

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.014
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.004
SRR8749032	Uninduced	0.026

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	0.712
SRR8400027	Control-Root	1.278