Gene detail information of Glyur001425s00026823.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G45140.10lipoxygenase 2
NRXP_003539375.10PREDICTED: linoleate 13S-lipoxygenase 2-1, chloroplastic-like [Glycine max]
Swissprottr|O24370|LOX21_SOLTU0Linoleate 13S-lipoxygenase 2-1, chloroplastic (Precursor)
trEMBLtr|I1LQG7|I1LQG7_SOYBN0Lipoxygenase {ECO:0000256|RuleBase:RU003975}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold014252930836207-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00454LOX2S EC:1.13.11.12 Linoleic acid metabolism map00591
alpha-Linolenic acid metabolismmap00592


Gene Ontology

biological_process

GO:0055114  oxidation-reduction process


molecular_function

GO:0005515  protein binding

GO:0016491  oxidoreductase activity

GO:0016702  oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen

GO:0046872  metal ion binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001425s00026823.1PF01477.18PLAT1402222.70E-14
Glyur001425s00026823.1PF00305.14Lipoxygenase2346425.70E-150
Glyur001425s00026823.1PF00305.14Lipoxygenase6418769.10E-98


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control2.017
SRR1783600control2.014
SRR1783602moderate drought stress5.099
SRR1811619moderate drought stress5.067

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain1.619
DRR006520Root Summer glycyrrhizin high producing strain1.618
DRR006521Root Winter glycyrrhizin high producing strain0.109
DRR006522Root Winter glycyrrhizin high producing strain0.142
DRR006523Root Summer glycyrrhizin low producing strain0.490
DRR006524Root Summer glycyrrhizin low producing strain0.451
DRR006525Leaf Summer glycyrrhizin high producing strain213.276
DRR006526Leaf Summer glycyrrhizin high producing strain211.064

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)2.388
SRR2868004Drought Stress(Tissue:root)0.387
SRR2967015Control (Tissue:root)0.361

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave163.792
SRR9715740Leave306.229
SRR9715741Leave237.998
SRR9715739Root0.369
SRR9715742Root2.388
SRR9715743Root1.362

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h0.000
SRR8749028MeJA induced 9h0.000
SRR8749029MeJA induced 9h0.026
SRR8749030Uninduced0.062
SRR8749031Uninduced0.100
SRR8749032Uninduced0.065

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root1.004
SRR8400027Control-Root0.794

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved