Gene detail information of Glyur001425s00026826.2


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G17420.15.00E-28lipoxygenase 3
NRXP_003537949.12.63E-109PREDICTED: linoleate 13S-lipoxygenase 2-1, chloroplastic-like [Glycine max]
Swissprottr|O24370|LOX21_SOLTU2.00E-59Linoleate 13S-lipoxygenase 2-1, chloroplastic (Precursor)
trEMBLtr|K7LPI4|K7LPI4_SOYBN1.00E-109Lipoxygenase {ECO:0000256|RuleBase:RU003975}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold014254861058181-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00454LOX2S EC:1.13.11.12 Linoleic acid metabolism map00591
alpha-Linolenic acid metabolismmap00592


Gene Ontology

biological_process

GO:0055114  oxidation-reduction process


molecular_function

GO:0016491  oxidoreductase activity

GO:0016702  oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen

GO:0046872  metal ion binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001425s00026826.2PF00305.14Lipoxygenase442941.00E-71
Glyur001425s00026826.2PF00305.14Lipoxygenase3086002.60E-121


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control0.352
SRR1783600control0.344
SRR1783602moderate drought stress6.515
SRR1811619moderate drought stress6.443

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain13.050
DRR006520Root Summer glycyrrhizin high producing strain12.923
DRR006521Root Winter glycyrrhizin high producing strain0.174
DRR006522Root Winter glycyrrhizin high producing strain0.170
DRR006523Root Summer glycyrrhizin low producing strain0.377
DRR006524Root Summer glycyrrhizin low producing strain0.414
DRR006525Leaf Summer glycyrrhizin high producing strain531.677
DRR006526Leaf Summer glycyrrhizin high producing strain528.950

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)0.718
SRR2868004Drought Stress(Tissue:root)1.155
SRR2967015Control (Tissue:root)0.513

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave1001.112
SRR9715740Leave937.277
SRR9715741Leave903.399
SRR9715739Root2.550
SRR9715742Root37.179
SRR9715743Root29.651

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h0.044
SRR8749028MeJA induced 9h0.000
SRR8749029MeJA induced 9h0.000
SRR8749030Uninduced0.090
SRR8749031Uninduced0.000
SRR8749032Uninduced0.000

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root0.237
SRR8400027Control-Root0.623

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved