Gene detail information of Glyur001426s00029333.2


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G57160.10DNA ligase IV
NRXP_004487997.10PREDICTED: DNA ligase 4-like [Cicer arietinum]
COGNP_615688.13.00E-32DNA ligase (ATP) [Methanosarcina acetivorans C2A]
Swissprottr|Q9LL84|DNLI4_ARATH0DNA ligase 4
trEMBLtr|K7MBU8|K7MBU8_SOYBN0DNA ligase {ECO:0000256|RuleBase:RU000617}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold014263945262081-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K10777LIG4, DNL4 EC:6.5.1.1 Non-homologous end-joining map03450


Gene Ontology

biological_process

GO:0006281  DNA repair

GO:0006310  DNA recombination

GO:0051103  DNA ligation involved in DNA repair


molecular_function

GO:0003677  DNA binding

GO:0003909  DNA ligase activity

GO:0003910  DNA ligase (ATP) activity

GO:0005524  ATP binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001426s00029333.2PF04675.9DNA_ligase_A_N61872.50E-38
Glyur001426s00029333.2PF01068.16DNA_ligase_A_M2263112.90E-17
Glyur001426s00029333.2PF04679.10DNA_ligase_A_C4215391.90E-13
Glyur001426s00029333.2PF12738.2PTCB-BRCT5816253.10E-08


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control6.972
SRR1783600control7.049
SRR1783602moderate drought stress7.777
SRR1811619moderate drought stress7.691

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain4.906
DRR006520Root Summer glycyrrhizin high producing strain4.825
DRR006521Root Winter glycyrrhizin high producing strain11.765
DRR006522Root Winter glycyrrhizin high producing strain11.314
DRR006523Root Summer glycyrrhizin low producing strain4.495
DRR006524Root Summer glycyrrhizin low producing strain4.477
DRR006525Leaf Summer glycyrrhizin high producing strain5.640
DRR006526Leaf Summer glycyrrhizin high producing strain5.937

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)11.922
SRR2868004Drought Stress(Tissue:root)16.229
SRR2967015Control (Tissue:root)15.870

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave6.509
SRR9715740Leave3.586
SRR9715741Leave8.181
SRR9715739Root0.395
SRR9715742Root3.113
SRR9715743Root2.073

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h24.578
SRR8749028MeJA induced 9h24.316
SRR8749029MeJA induced 9h24.285
SRR8749030Uninduced23.385
SRR8749031Uninduced19.957
SRR8749032Uninduced22.050

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root11.371
SRR8400027Control-Root12.473

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved