Gene detail information of Glyur001434s00037076.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G52510.1 | 1.00E-123 | SCARECROW-like 8 |
| NR | XP_004512836.1 | 0 | PREDICTED: scarecrow-like protein 8-like [Cicer arietinum] |
| Swissprot | tr|Q9FYR7|SCL8_ARATH | 2.00E-154 | Scarecrow-like protein 8 |
| trEMBL | tr|V7C4K6|V7C4K6_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW24195.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01434 | 16290 | 18233 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | GRAS |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001434s00037076.1 | PF03514.9 | GRAS | 277 | 647 | 6.50E-88 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 41.956 |
| SRR1783600 | control | 39.860 |
| SRR1783602 | moderate drought stress | 44.951 |
| SRR1811619 | moderate drought stress | 44.756 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 66.066 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 64.579 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 58.931 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 57.241 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 115.289 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 115.113 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 36.275 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 34.477 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 55.103 |
| SRR2868004 | Drought Stress(Tissue:root) | 63.443 |
| SRR2967015 | Control (Tissue:root) | 83.928 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 53.595 |
| SRR9715740 | Leave | 44.198 |
| SRR9715741 | Leave | 56.193 |
| SRR9715739 | Root | 188.012 |
| SRR9715742 | Root | 176.864 |
| SRR9715743 | Root | 174.413 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 58.609 |
| SRR8749028 | MeJA induced 9h | 70.308 |
| SRR8749029 | MeJA induced 9h | 67.048 |
| SRR8749030 | Uninduced | 33.641 |
| SRR8749031 | Uninduced | 31.891 |
| SRR8749032 | Uninduced | 49.988 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 57.843 |
| SRR8400027 | Control-Root | 65.450 |