Gene detail information of Glyur001434s00037079.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G52520.10Class II aaRS and biotin synthetases superfamily protein
NRAES73215.20prolyl-tRNA synthetase family protein [Medicago truncatula]
COGYP_004861552.10prolyl-tRNA synthetase [Candidatus Chloracidobacterium thermophilum B]
trEMBLtr|G7J5P9|G7J5P9_MEDTR0Prolyl-tRNA synthetase family protein {ECO:0000313|EMBL:AES73215.2}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold014343639241964+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01881PARS, proS EC:6.1.1.15 Aminoacyl-tRNA biosynthesis map00970


Gene Ontology

biological_process

GO:0006418  tRNA aminoacylation for protein translation

GO:0006433  prolyl-tRNA aminoacylation


cellular_component

GO:0005737  cytoplasm


molecular_function

GO:0000166  nucleotide binding

GO:0004812  aminoacyl-tRNA ligase activity

GO:0004827  proline-tRNA ligase activity

GO:0005524  ATP binding

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001434s00037079.1PF00587.20tRNA-synt_2b1122821.00E-15
Glyur001434s00037079.1PF03129.15HGTP_anticodon3554333.40E-16
Glyur001434s00037079.1PF09180.6ProRS-C_14845519.20E-19


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control7.985
SRR1783600control8.098
SRR1783602moderate drought stress7.537
SRR1811619moderate drought stress7.109

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain10.373
DRR006520Root Summer glycyrrhizin high producing strain10.223
DRR006521Root Winter glycyrrhizin high producing strain11.304
DRR006522Root Winter glycyrrhizin high producing strain10.872
DRR006523Root Summer glycyrrhizin low producing strain10.968
DRR006524Root Summer glycyrrhizin low producing strain10.762
DRR006525Leaf Summer glycyrrhizin high producing strain37.193
DRR006526Leaf Summer glycyrrhizin high producing strain36.930

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)18.435
SRR2868004Drought Stress(Tissue:root)15.630
SRR2967015Control (Tissue:root)15.544

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave31.491
SRR9715740Leave40.641
SRR9715741Leave29.554
SRR9715739Root4.912
SRR9715742Root8.402
SRR9715743Root8.624

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h21.501
SRR8749028MeJA induced 9h15.594
SRR8749029MeJA induced 9h14.851
SRR8749030Uninduced10.341
SRR8749031Uninduced10.290
SRR8749032Uninduced9.323

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root20.449
SRR8400027Control-Root18.656

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved