Gene detail information of Glyur001443s00035064.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G09760.1 | 2.00E-89 | RING/U-box superfamily protein |
| NR | KEH42255.1 | 0 | RING/U-box protein [Medicago truncatula] |
| Swissprot | tr|F4JKK0|SUD1_ARATH | 9.00E-06 | Probable E3 ubiquitin ligase SUD1 |
| trEMBL | tr|A0A072VVZ1|A0A072VVZ1_MEDTR | 0 | RING/U-box protein {ECO:0000313|EMBL:KEH42255.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01443 | 838 | 6717 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001443s00035064.1 | PF12906.2 | RINGv | 267 | 314 | 7.80E-11 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.802 |
| SRR1783600 | control | 3.653 |
| SRR1783602 | moderate drought stress | 7.210 |
| SRR1811619 | moderate drought stress | 7.283 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.413 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.975 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.014 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.845 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.695 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.478 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 7.712 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 7.673 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 37.201 |
| SRR2868004 | Drought Stress(Tissue:root) | 31.906 |
| SRR2967015 | Control (Tissue:root) | 28.251 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 14.646 |
| SRR9715740 | Leave | 18.616 |
| SRR9715741 | Leave | 22.092 |
| SRR9715739 | Root | 2.336 |
| SRR9715742 | Root | 8.265 |
| SRR9715743 | Root | 7.268 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.691 |
| SRR8749028 | MeJA induced 9h | 10.002 |
| SRR8749029 | MeJA induced 9h | 2.672 |
| SRR8749030 | Uninduced | 6.616 |
| SRR8749031 | Uninduced | 3.947 |
| SRR8749032 | Uninduced | 2.461 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 22.742 |
| SRR8400027 | Control-Root | 14.883 |