Gene detail information of Glyur001443s00035069.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G09770.15.00E-101RING/U-box superfamily protein
NRXP_007145222.10hypothetical protein PHAVU_007G220900g [Phaseolus vulgaris]
Swissprottr|Q9S752|LOFG2_ARATH2.00E-123Probable E3 ubiquitin-protein ligase LOG2
trEMBLtr|V7BKV9|V7BKV9_PHAVU0Uncharacterized protein {ECO:0000313|EMBL:ESW17216.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold014432581432044-


Gene family

Gene familysubfamily
Ubiquitin FamilyRING


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

molecular_function

GO:0005515  protein binding

GO:0008270  zinc ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001443s00035069.1PF13920.1zf-C3HC4_34174631.90E-16


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control9.754
SRR1783600control10.028
SRR1783602moderate drought stress11.983
SRR1811619moderate drought stress11.832

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain21.694
DRR006520Root Summer glycyrrhizin high producing strain22.050
DRR006521Root Winter glycyrrhizin high producing strain21.217
DRR006522Root Winter glycyrrhizin high producing strain20.932
DRR006523Root Summer glycyrrhizin low producing strain23.478
DRR006524Root Summer glycyrrhizin low producing strain23.660
DRR006525Leaf Summer glycyrrhizin high producing strain7.433
DRR006526Leaf Summer glycyrrhizin high producing strain7.552

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)38.398
SRR2868004Drought Stress(Tissue:root)47.939
SRR2967015Control (Tissue:root)46.544

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave14.144
SRR9715740Leave11.718
SRR9715741Leave11.928
SRR9715739Root27.735
SRR9715742Root28.460
SRR9715743Root27.346

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h40.196
SRR8749028MeJA induced 9h41.757
SRR8749029MeJA induced 9h30.217
SRR8749030Uninduced24.436
SRR8749031Uninduced15.436
SRR8749032Uninduced15.548

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root30.351
SRR8400027Control-Root34.466

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved