Gene detail information of Glyur001445s00037293.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G45220.10Plant invertase/pectin methylesterase inhibitor superfamily
NRKEH29125.10pectinesterase/pectinesterase inhibitor [Medicago truncatula]
COGYP_006407803.13.00E-57pectin methylesterase [Belliella baltica DSM 15883]
Swissprottr|O04887|PME2_CITSI0Pectinesterase 2 (Precursor)
trEMBLtr|A0A072UTA7|A0A072UTA7_MEDTR0Pectinesterase {ECO:0000256|RuleBase:RU000589}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold014451387117412+


Gene family

Gene familysubfamily
Carbohydrate-Active enzymes FamilyCE8


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01051E3.1.1.11 EC:3.1.1.11 Pentose and glucuronate interconversions map00040


Gene Ontology

biological_process

GO:0042545  cell wall modification


cellular_component

GO:0005618  cell wall


molecular_function

GO:0004857  enzyme inhibitor activity

GO:0030599  pectinesterase activity

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001445s00037293.1PF04043.10PMEI301744.00E-27
Glyur001445s00037293.1PF01095.14Pectinesterase2135055.80E-141


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control2.367
SRR1783600control2.460
SRR1783602moderate drought stress3.342
SRR1811619moderate drought stress3.441

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain0.000
DRR006520Root Summer glycyrrhizin high producing strain0.000
DRR006521Root Winter glycyrrhizin high producing strain0.067
DRR006522Root Winter glycyrrhizin high producing strain0.066
DRR006523Root Summer glycyrrhizin low producing strain0.000
DRR006524Root Summer glycyrrhizin low producing strain0.000
DRR006525Leaf Summer glycyrrhizin high producing strain2.953
DRR006526Leaf Summer glycyrrhizin high producing strain3.032

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)112.552
SRR2868004Drought Stress(Tissue:root)112.542
SRR2967015Control (Tissue:root)82.455

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave16.944
SRR9715740Leave11.696
SRR9715741Leave15.067
SRR9715739Root2.050
SRR9715742Root0.891
SRR9715743Root1.348

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h26.698
SRR8749028MeJA induced 9h579.806
SRR8749029MeJA induced 9h157.763
SRR8749030Uninduced1782.428
SRR8749031Uninduced3097.372
SRR8749032Uninduced1416.153

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root12.991
SRR8400027Control-Root10.261

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved