Gene detail

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Gene detail information of Glyur001456s00029807.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G16070.1	2.00E-99	tubby like protein 8
NR	XP_004486597.1	0	PREDICTED: tubby-like protein 8-like [Cicer arietinum]
Swissprot	tr\|Q9S9M8\|TLP8_ARATH	1.00E-132	Tubby-like protein 8
trEMBL	tr\|V7BY21\|V7BY21_PHAVU	3.00E-179	Uncharacterized protein {ECO:0000313\|EMBL:ESW22819.1}

Sequence

Transcript Sequence

>Glyur001456s00029807.1
ATGAAATCCAAAAATGTGTTTCCGCTTTTCTTCGCCATCAGAAACATAATTGATTAATCAATTAATAAGAATCTAGTTTCGAGTTCAAATAGCACCGCAACCCCAACACACACCAATTAATGTTCAGTTCAACAAAACAAGCAAATGAAGAAGATGAATGGTTCCCAAAAACCCTGCTCAGCTTCTTCAGGCGAAAGCGACCTCAAACACTGCCGTAGCTGCAGCACCCCCTCCTCCAAACCCAAACCTCAAGAAGAAGAAGACAACAAGGAGAACAACAACAACGCCAATGGGAATGCCTCCTCTTCTTCTCTCCCCAAGTCCAAGTCTTTGTCTTTGCCCTTGTCTGTATCCACAAACAGAGACAGAGAGAGGATTACTCTGAAGCCTTCGTCGCTGCAATTCTGCATGCAAATCCACGACCCTATTCCTCTTGATTCCCACTTTTCCACTTCCTCTTTGAATATCTGGGACTACTCTGACTCCGACGCTGCTCCCGCTTCATCCTGGTCCACTCTGCCCAACAAGTCTTTGATGTGTAGACCGTTGCCTATTGATATTGGAAGGTGTACGTGTGTTATAGTGAAGGAAGCAACTCCACAGGGTCTATCTGGCGGCACTCTCTTCTCACTTTATACCTATGAAGGACAGGGACGACAGAATAGGAAACTGGCCGTGGCCCACCACATGTGGCGGAGTGGGAGGTCTCGCTTCACCGTTGCTCAGAACGTGAGAGGGCTTCTCTCCAATTCAGATGATAGTTTCCTTGGGANCGTAACTGCTAACCTCACCGGCTCAAAATACCACATTTGGGATCAGAGATATCGTCGTAATTCCCATTCCCATTCCCAGAGTAAACAACCAAAGGCAAAGCCTCCTCTTGCTGTTGTCACGTATGTCCCTACAATAGCAACATGTACAGGAAGTCACAGAAGCATGAGAGCATATATACCCAATCATCAATCCATGTCATTCAAGAACACCTCCCAGGTACAACATGTTAAGGGACTGCCAATGGAATGGGAGGGAAAATTGGACAAAGTCCACCAATTGTTCTCAAGGGTTCCACTGTACAACAAGATTACAAAGCAATTTGAGCTCGACTTCAGAGACAAAGGGAGGACCGGACTTAGAATCCAGAGATCGGTAAAGAATTTTCAGCTGACTTTAGAGGAGAATGGGAGGCAGACAATACTGCAGCTAGGGAGGGTGGGAAAATCAAAATTCGTTATGGACTACAGATATCCTTTGACTGGTTACCAAGCGTTTTGCATATGTCTGGCTTCCATNGATTCAAAGCTTTGCTGCATAGTATAG

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold01456	36221	39181	+

Gene family

Gene family	subfamily
Transcription Factors Family	TUB

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001456s00029807.1	PF01167.13	Tub	159	383	2.60E-29

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.583
SRR1783600	control	3.747
SRR1783602	moderate drought stress	2.182
SRR1811619	moderate drought stress	2.203

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.540
DRR006520	Root Summer glycyrrhizin high producing strain	3.400
DRR006521	Root Winter glycyrrhizin high producing strain	0.832
DRR006522	Root Winter glycyrrhizin high producing strain	0.899
DRR006523	Root Summer glycyrrhizin low producing strain	1.707
DRR006524	Root Summer glycyrrhizin low producing strain	1.558
DRR006525	Leaf Summer glycyrrhizin high producing strain	11.815
DRR006526	Leaf Summer glycyrrhizin high producing strain	11.936

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	13.148
SRR2868004	Drought Stress(Tissue:root)	5.652
SRR2967015	Control (Tissue:root)	6.605

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	8.597
SRR9715740	Leave	7.350
SRR9715741	Leave	9.982
SRR9715739	Root	0.774
SRR9715742	Root	1.093
SRR9715743	Root	0.689

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	25.516
SRR8749028	MeJA induced 9h	9.788
SRR8749029	MeJA induced 9h	4.653
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.389

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	9.321
SRR8400027	Control-Root	5.829