Gene detail information of Glyur001456s00029809.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G57820.1 | 8.00E-10 | zinc ion binding |
| NR | XP_003542140.1 | 0 | PREDICTED: uncharacterized protein LOC100816300 isoform X1 [Glycine max] |
| trEMBL | tr|I1M5Z8|I1M5Z8_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA13G44860.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01456 | 51697 | 56767 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.645 |
| SRR1783600 | control | 1.642 |
| SRR1783602 | moderate drought stress | 2.339 |
| SRR1811619 | moderate drought stress | 2.309 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.576 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.524 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 10.473 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 10.611 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.761 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.765 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.371 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.344 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 1.289 |
| SRR2868004 | Drought Stress(Tissue:root) | 1.837 |
| SRR2967015 | Control (Tissue:root) | 1.653 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.792 |
| SRR9715740 | Leave | 1.241 |
| SRR9715741 | Leave | 0.898 |
| SRR9715739 | Root | 0.893 |
| SRR9715742 | Root | 2.443 |
| SRR9715743 | Root | 1.609 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 6.960 |
| SRR8749028 | MeJA induced 9h | 5.709 |
| SRR8749029 | MeJA induced 9h | 3.581 |
| SRR8749030 | Uninduced | 3.817 |
| SRR8749031 | Uninduced | 2.754 |
| SRR8749032 | Uninduced | 1.301 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 1.553 |
| SRR8400027 | Control-Root | 1.851 |