Gene detail information of Glyur001456s00029809.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G57820.18.00E-10zinc ion binding
NRXP_003542140.10PREDICTED: uncharacterized protein LOC100816300 isoform X1 [Glycine max]
trEMBLtr|I1M5Z8|I1M5Z8_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA13G44860.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold014565169756767-


Gene family

Gene familysubfamily
Ubiquitin FamilyRING


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

molecular_function

GO:0005515  protein binding

GO:0008270  zinc ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
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Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control1.645
SRR1783600control1.642
SRR1783602moderate drought stress2.339
SRR1811619moderate drought stress2.309

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain2.576
DRR006520Root Summer glycyrrhizin high producing strain2.524
DRR006521Root Winter glycyrrhizin high producing strain10.473
DRR006522Root Winter glycyrrhizin high producing strain10.611
DRR006523Root Summer glycyrrhizin low producing strain2.761
DRR006524Root Summer glycyrrhizin low producing strain2.765
DRR006525Leaf Summer glycyrrhizin high producing strain1.371
DRR006526Leaf Summer glycyrrhizin high producing strain1.344

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)1.289
SRR2868004Drought Stress(Tissue:root)1.837
SRR2967015Control (Tissue:root)1.653

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave0.792
SRR9715740Leave1.241
SRR9715741Leave0.898
SRR9715739Root0.893
SRR9715742Root2.443
SRR9715743Root1.609

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h6.960
SRR8749028MeJA induced 9h5.709
SRR8749029MeJA induced 9h3.581
SRR8749030Uninduced3.817
SRR8749031Uninduced2.754
SRR8749032Uninduced1.301

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root1.553
SRR8400027Control-Root1.851