Gene detail information of Glyur001459s00040510.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G26150.17.00E-11heat shock transcription factor A2
NRAFP57456.16.51E-12truncated heat shock factor A2 [Arabidopsis thaliana]
Swissprottr|O80982|HSFA2_ARATH1.00E-11Heat stress transcription factor A-2
trEMBLtr|J7G1E7|J7G1E7_ARATH2.00E-12Truncated heat shock factor A2 {ECO:0000313|EMBL:AFP57456.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold014595228056021-


Gene family

Gene familysubfamily
Transcription Factors FamilyHSF


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

biological_process

GO:0006355  regulation of transcription, DNA-templated

GO:0009408  response to heat


cellular_component

GO:0005634  nucleus


molecular_function

GO:0003700  transcription factor activity, sequence-specific DNA binding

GO:0043565  sequence-specific DNA binding

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001459s00040510.1PF00447.12HSF_DNA-bind2292606.10E-09


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control0.218
SRR1783600control0.193
SRR1783602moderate drought stress0.486
SRR1811619moderate drought stress0.532

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain0.955
DRR006520Root Summer glycyrrhizin high producing strain0.729
DRR006521Root Winter glycyrrhizin high producing strain0.287
DRR006522Root Winter glycyrrhizin high producing strain0.357
DRR006523Root Summer glycyrrhizin low producing strain0.145
DRR006524Root Summer glycyrrhizin low producing strain0.165
DRR006525Leaf Summer glycyrrhizin high producing strain0.369
DRR006526Leaf Summer glycyrrhizin high producing strain0.110

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)0.040
SRR2868004Drought Stress(Tissue:root)0.000
SRR2967015Control (Tissue:root)0.018

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave0.196
SRR9715740Leave0.112
SRR9715741Leave0.381
SRR9715739Root0.938
SRR9715742Root0.180
SRR9715743Root0.299

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h0.055
SRR8749028MeJA induced 9h0.022
SRR8749029MeJA induced 9h0.146
SRR8749030Uninduced0.014
SRR8749031Uninduced0.000
SRR8749032Uninduced0.019

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root0.639
SRR8400027Control-Root0.635

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved