Gene detail information of Glyur001467s00033958.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G02470.4 | 2.00E-122 | S-adenosylmethionine decarboxylase |
| NR | KEH17677.1 | 0 | S-adenosylmethionine decarboxylase proenzyme [Medicago truncatula] |
| Swissprot | tr|Q42679|DCAM_CATRO | 1.00E-176 | S-adenosylmethionine decarboxylase beta chain (Precursor) |
| trEMBL | tr|A0A072TJR3|A0A072TJR3_MEDTR | 0 | S-adenosylmethionine decarboxylase proenzyme {ECO:0000313|EMBL:KEH17677.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01467 | 10814 | 13599 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K01611 | speD, AMD1 | EC:4.1.1.50 | Cysteine and methionine metabolism | map00270 |
| Arginine and proline metabolism | map00330 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001467s00033958.1 | PF08132.6 | AdoMetDC_leader | 51 | 97 | 7.70E-25 |
| Glyur001467s00033958.1 | PF01536.11 | SAM_decarbox | 101 | 423 | 3.30E-132 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 16.309 |
| SRR1783600 | control | 16.474 |
| SRR1783602 | moderate drought stress | 25.331 |
| SRR1811619 | moderate drought stress | 24.774 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 39.964 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 40.816 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 5.375 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 5.244 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 16.001 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 16.158 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 125.749 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 126.550 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 61.964 |
| SRR2868004 | Drought Stress(Tissue:root) | 37.037 |
| SRR2967015 | Control (Tissue:root) | 46.325 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 101.004 |
| SRR9715740 | Leave | 88.068 |
| SRR9715741 | Leave | 62.782 |
| SRR9715739 | Root | 39.548 |
| SRR9715742 | Root | 82.214 |
| SRR9715743 | Root | 77.377 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.103 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.035 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.222 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 67.759 |
| SRR8400027 | Control-Root | 49.038 |