Gene detail information of Glyur001467s00033965.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G16000.1 | 0 | NSP-interacting kinase 1 |
| NR | KHN14464.1 | 0 | Protein NSP-INTERACTING KINASE 1 [Glycine soja] |
| COG | YP_004775215.1 | 8.00E-21 | RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745] |
| Swissprot | tr|Q9LFS4|NIK1_ARATH | 0 | Protein NSP-INTERACTING KINASE 1 (Precursor) |
| trEMBL | tr|I1KWN4|I1KWN4_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA08G28380.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01467 | 46914 | 50295 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | PPC:1.12.2 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001467s00033965.1 | PF08263.7 | LRRNT_2 | 35 | 73 | 6.90E-13 |
| Glyur001467s00033965.1 | PF00560.28 | LRR_1 | 101 | 123 | 1.2 |
| Glyur001467s00033965.1 | PF13855.1 | LRR_8 | 124 | 184 | 9.50E-09 |
| Glyur001467s00033965.1 | PF00069.20 | Pkinase | 308 | 547 | 4.20E-32 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 17.050 |
| SRR1783600 | control | 17.272 |
| SRR1783602 | moderate drought stress | 22.692 |
| SRR1811619 | moderate drought stress | 22.456 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 18.485 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 18.106 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.280 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.300 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 12.693 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 12.330 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 7.457 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 7.961 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 51.023 |
| SRR2868004 | Drought Stress(Tissue:root) | 59.817 |
| SRR2967015 | Control (Tissue:root) | 75.435 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 6.217 |
| SRR9715740 | Leave | 5.077 |
| SRR9715741 | Leave | 3.614 |
| SRR9715739 | Root | 9.495 |
| SRR9715742 | Root | 21.390 |
| SRR9715743 | Root | 17.387 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.284 |
| SRR8749028 | MeJA induced 9h | 0.166 |
| SRR8749029 | MeJA induced 9h | 0.101 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 24.339 |
| SRR8400027 | Control-Root | 30.840 |