Gene detail information of Glyur001469s00033482.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G15740.1 | 0 | O-fucosyltransferase family protein |
| NR | XP_004508647.1 | 0 | PREDICTED: uncharacterized protein At1g04910-like isoform X2 [Cicer arietinum] |
| Swissprot | tr|Q8W486|Y1491_ARATH | 6.00E-80 | Uncharacterized protein At1g04910 |
| trEMBL | tr|A0A072URS3|A0A072URS3_MEDTR | 0 | GDP-fucose O-fucosyltransferase-like protein {ECO:0000313|EMBL:KEH32061.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01469 | 27532 | 31264 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GTnc |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001469s00033482.1 | PF10250.4 | O-FucT | 124 | 445 | 2.60E-91 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 12.819 |
| SRR1783600 | control | 12.864 |
| SRR1783602 | moderate drought stress | 8.621 |
| SRR1811619 | moderate drought stress | 8.667 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 15.313 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 15.195 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 24.955 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 24.363 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 17.195 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 17.287 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 8.434 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 8.589 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 20.164 |
| SRR2868004 | Drought Stress(Tissue:root) | 17.664 |
| SRR2967015 | Control (Tissue:root) | 16.248 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 21.021 |
| SRR9715740 | Leave | 6.150 |
| SRR9715741 | Leave | 11.067 |
| SRR9715739 | Root | 11.931 |
| SRR9715742 | Root | 23.266 |
| SRR9715743 | Root | 20.911 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 9.150 |
| SRR8749028 | MeJA induced 9h | 16.734 |
| SRR8749029 | MeJA induced 9h | 10.065 |
| SRR8749030 | Uninduced | 6.358 |
| SRR8749031 | Uninduced | 8.937 |
| SRR8749032 | Uninduced | 7.568 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 29.746 |
| SRR8400027 | Control-Root | 36.820 |