Gene detail information of Glyur001473s00033916.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G36870.1 | 1.00E-115 | xyloglucan endotransglucosylase/hydrolase 32 |
| NR | KHN09532.1 | 3.99E-163 | Putative xyloglucan endotransglucosylase/hydrolase protein 32 [Glycine soja] |
| Swissprot | tr|Q9SJL9|XTH32_ARATH | 7.00E-145 | Probable xyloglucan endotransglucosylase/hydrolase protein 32 (Precursor) |
| trEMBL | tr|I1JPQ7|I1JPQ7_SOYBN | 1.00E-163 | Xyloglucan endotransglucosylase/hydrolase {ECO:0000256|RuleBase:RU361120} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01473 | 43644 | 46034 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH16 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001473s00033916.1 | PF00722.16 | Glyco_hydro_16 | 82 | 186 | 1.70E-25 |
| Glyur001473s00033916.1 | PF06955.7 | XET_C | 213 | 257 | 2.80E-15 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 65.735 |
| SRR1783600 | control | 65.901 |
| SRR1783602 | moderate drought stress | 35.740 |
| SRR1811619 | moderate drought stress | 35.288 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 44.705 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 42.133 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 10.196 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 9.781 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.267 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.973 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 3.004 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.109 |
| SRR2967015 | Control (Tissue:root) | 1.595 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 1.015 |
| SRR9715740 | Leave | 0.816 |
| SRR9715741 | Leave | 0.292 |
| SRR9715739 | Root | 20.109 |
| SRR9715742 | Root | 6.504 |
| SRR9715743 | Root | 8.098 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 12.884 |
| SRR8400027 | Control-Root | 10.576 |