Gene detail

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Gene detail information of Glyur001490s00024448.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G27030.1	0	TOPLESS-related 3
NR	XP_006606545.1	0	PREDICTED: topless-related protein 3-like [Glycine max]
COG	YP_007119786.1	1.00E-17	WD40 repeat-containing protein [Microcoleus sp. PCC 7113]
Swissprot	tr\|Q84JM4\|TPR3_ARATH	0	Topless-related protein 3
trEMBL	tr\|I1NJ39\|I1NJ39_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA20G38230.1}

Sequence

Transcript Sequence

>Glyur001490s00024448.1
GTACAACGCATCGAAGATAGCGAGACCAAGTCCCTCCACTCTCTCTCTTTCCTCTTTCTTATCCGCAGCCTTTCAAACCCTAGAAATTCTCGAACTCCGAGCTTCTTCATGTAAAATCCTCAAGATGCTCTGAATTTTTTTTTGAGGTTGTGTGAGTTCTGATTTAGAGCAGAGGTGGAGGGAGGGAGTTTGTGTGGTTCAGCTCGGATTTGTCGGTGGTTGGTGGAATTGGAGTTCTGTGCTGTTTTTGTTCTCTTTATAAGCATTGAGGTTACCGTGTGAAGGTACTATTCGGAGATCGGTGTTCAGAGATCGAAATTACCGGTGNTGTTTCAGATTTGAGAGTCCGATATGTCTTCTTTGAGCAGAGAATTGGTATTTCTCATACTCCAGTTTCTGGAGGAAGAGAAGTTCAAAGAGTCTGTTCACAAGCTTGAGAAAGAATCAGGGTTCTTTTTCAACATGAAGTACTTTGAGGAAAAAGTGCAGGCTGGAGAATGGGAAGAAGTTGAAAAGTATTTATCAGGATTTACCAAAGTTGATGATAATAGATATTCAATGAAAATATTCTTTGAAATTAGAAAGCAGAAATATCTAGAAGCACTTGATCGGCAAGACAAGTCAAAGGCTGTTGAGATATTAGTGGGTGATTTAAAAGTGTTCTCCACCTTCAATGAGGAACTATACAAAGAAATCACCCAGCTGTTAACTCTTAGTAATTTTAGGGAGAATGAGCAGCTGTCCAAATATGGTGACACCAAAACTGCTCGAAGCATTATGTTGATTGAACTAAAAAAACTCATAGAGGCAAATCCTCTTTTCCGTGATAAGCTTGTCTTCCCTACCCTTAAGTCATCAAGACTGCGGACTTTAATCAATCAGAGTCTGAACTGGCAGCACCAGCTTTGTAAAAACCCAAGGCCAAACCCAGATATAAAGACTTTATTCACAGATCACACTTGTGCACCTCCTAATGGTCCATTGGCACCTACACCTGTCAATCTTCCAATTGCTGCAGTTGCAAAGCCTGCTGCTTATACTGCACTTGGAGCTCATGGTCCCTTCCCACCTGCTGCTGCTGCAACGGCTAATGCTAATGCTTTGGCTGGATGGATGGCCAATGCCTCTGCTTCATCATCTGTCCAAGCAGCTGTTGTCACAGCGTCAACTATACCAGTCCCTCAGAATCAAGTATCTATCTTGAAACGTCCTAGAACACCTCCGGCAACTCCTGGGATGGTTGATTATCAGAATCTGAATGCTGATCATGAACAGCTAATGAAAAGGCTTCGTCCTGGTCATTCTGTGGAGGAGGTTTCCTATCCTGTGGCTCGACAAGCCTCTTGGTCACTGGATGATCTACCAAGAACAGTGGCTATGACTTTGCATCAAGGATCCTCTGTCACAAGCATGGATTTCCATCCTTCTCACCATACCTTACTTCTTGTTGGTTCTAATAATGGTGAAATTGCCCTGTGGGAACTCAGTTTACGAGAAAGGTTGGTCTCAAAGCCATTCAAGATATGGGATGTGTCGGCATGCTCATTTCCATTTCAGGCAGCTGCAGTCAAGGATGCACCTATTTCTGTCAGCCGTGTCACATGGAGCCCTGATGGAAGTTTTGTGGGTGTTGCTTTTACCAAACATTTGATTCATTTGTATGCCTACACTGGATCAAACGAGCTAGCCCAGCGTATAGAGGTTGATGCCCATGTTGGTGGTGTGAATGATTTGGCATTTGCTCATCCAAATAAACAGCTGTGTATTGTGACTTGTGGGGATGATAAGTTGATAAAGGTGTGGGATGCAAATGGACGAAGACTATTTACCTTTGAGGGGCATGAGGCACCTGTATATTCAATCTGTCCTCATCACAAAGAGAACATTCAGTTCATATTTTCAACAGCCATTGATGGGAAAATAAAGGCCTGGTTATACGATAACATGGGTTCTAGGGTTGACTATGATGCCCCTGGTCACTCATGTACTACAATGCTTTATAGTGCTGACGGAAGTAGACTGTTTTCTTGTGGGACAAGTAAAGATGGAGAGTCTTTTCTTGTTGAATGGAACGAAAGTGAAGGAGCCATTAAGAGAACGTACAATGGATTCAGAAAGAAATCTGCTGGTGTTGTGCAGTTCGACACAACCCAAAATCGCTTTTTAGCTGCAGGTGAAGATGGCCAAGTGAAGTTTTGGGACATGGACAATATTAATCTTCTAACTAGCATTGATGCAGATGGTGGATTACAGGGCCTTCCACGCTTGAGATTCAATAAGGAAGGAAATATTCTTGCTGTTACTACTGTGGACAATGGATTCAAGATACTGGCTAATGCTACTGGTATTAGATCCTTAAGAACAATTGAAGCTCCTGCATTTGAAGCATTGAGGTCGCCCATCGAATCTGCTGCAATCAAGGTATCTGGCTCTTCTACTGTTAATGTTACTCCCGTCAACTGTAAAGTGGAAAGAAGCTCCCCNGTCAGGCCTTCTCCAATTCTTAATGGAGTTGATCCCATGGGTCGAAGTGTAGAGAAACCAAGAACTGTGGAAGATGTAATAGATAGAACTAAACCATGGCAACTGTCTGAAATTCTGGATCCTGTCCAATGTCGGTCAGTTACCTTGCCTGACAGCACAGATTCATTCAGCAAGGTTGTTCGACTTTTATATACAAATTCTGGTGTTGGTATTTTGGCCCTTGGTTCAAATGGTGTCCAGAAGCTTTGGAAATGGGCTCGCAATGAACATAATCCTACTGGGAAGGCTACTGCTAGTGTTGTTCCACAACATTGGCAACCCAACAGTGGTCTTCTTATGACTAATGATATCTCGGGTGTCAACCTTGAAGAAGCAGTCCCTTGCATTGCACTCTCAAAAAATGACTCATATGTTATGTCNGCCTGTGGTGGAAAAATTTCACTATTTAACATGATGACATTCAAGGTAATGACAACATTCATGTCACCATCTCCTGCCTCTACCTTNCTAGCTTTCCATCCCCAGGATAACAACATTATAGCCATTGGGATGGAAGATTCAACCATTCACATCTATAATGTTAGAGTGGATGAGGTGAAATCAAAATTGAAGGGTCACCAGAAGCGAATTACCGGTTTAGCCTTTTCAACCAATCTTAACATCCTCGTTTCATCTGGTGCTGATGCTCAACTTTGTGTGTGGAGTATTGATACATGGGAGAAAAGGAAATCAATTCCAATTCAACTACCTGCGGGAAAGTCACCTGTTGGTGATACACGTGTTCAGTTCCATTCTGATCAACTTCGCTTATTGGTAGTCCATGAGACTCAATTGGCAATATATGATGCCTCTAAGATGGATCGCATTCGGCAGTGGGTTCCCCAAGATGTTCTGCCTGCTCCCATATCATATGCAGCTTATTCCTGCAACAGTCAAAGCCAAGCTGTGCATCCTCTAGTGGTTGCGGCTCATCCACTAGAACCTAACCAGTTTGCTGTTGGGTTGACTGATGGGTCTGTCAGAGTGATAGAGCCCAGTGAATCAGAGGGCAAGTGGGGATCTTCTCCTCCTATGGACAACGGAATATTGAATGGTAGGGCAGCATCTTCATCTACAACAAGCAATCACACGGCCGATCAGGCTCAACGATAAGATTCAATTGTATTATACTAGTGTAGTTCTTTCCATTTGTAATTCTATTAGCCTAGGTGTGTAGGTTTTGATTCACCAATTTGTCTCATCCATATCAGGTCAGCTTGGACATAAAATGGTAAATGTTTAGATGACCCTTTTGTATACATTAATTTATTCTAGTTAACTTAATTCTATGTTTATATTTCATTGTAATATTCTTGTTTCTTGCCAACAATCGGTATGTGTGATAATTCTCCTCTCTTTTTTTTTGGTCATGTGATAATTTTCCTCTCATTATGGTATATAAAATCTGTTGTCAATTTGCCACTATTGGA

Protein Sequence

>Glyur001490s00024448.1
MSSLSRELVFLILQFLEEEKFKESVHKLEKESGFFFNMKYFEEKVQAGEWEEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDRQDKSKAVEILVGDLKVFSTFNEELYKEITQLLTLSNFRENEQLSKYGDTKTARSIMLIELKKLIEANPLFRDKLVFPTLKSSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFTDHTCAPPNGPLAPTPVNLPIAAVAKPAAYTALGAHGPFPPAAAATANANALAGWMANASASSSVQAAVVTASTIPVPQNQVSILKRPRTPPATPGMVDYQNLNADHEQLMKRLRPGHSVEEVSYPVARQASWSLDDLPRTVAMTLHQGSSVTSMDFHPSHHTLLLVGSNNGEIALWELSLRERLVSKPFKIWDVSACSFPFQAAAVKDAPISVSRVTWSPDGSFVGVAFTKHLIHLYAYTGSNELAQRIEVDAHVGGVNDLAFAHPNKQLCIVTCGDDKLIKVWDANGRRLFTFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDNMGSRVDYDAPGHSCTTMLYSADGSRLFSCGTSKDGESFLVEWNESEGAIKRTYNGFRKKSAGVVQFDTTQNRFLAAGEDGQVKFWDMDNINLLTSIDADGGLQGLPRLRFNKEGNILAVTTVDNGFKILANATGIRSLRTIEAPAFEALRSPIESAAIKVSGSSTVNVTPVNCKVERSSPVRPSPILNGVDPMGRSVEKPRTVEDVIDRTKPWQLSEILDPVQCRSVTLPDSTDSFSKVVRLLYTNSGVGILALGSNGVQKLWKWARNEHNPTGKATASVVPQHWQPNSGLLMTNDISGVNLEEAVPCIALSKNDSYVMSACGGKISLFNMMTFKVMTTFMSPSPASTXLAFHPQDNNIIAIGMEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTNLNILVSSGADAQLCVWSIDTWEKRKSIPIQLPAGKSPVGDTRVQFHSDQLRLLVVHETQLAIYDASKMDRIRQWVPQDVLPAPISYAAYSCNSQSQAVHPLVVAAHPLEPNQFAVGLTDGSVRVIEPSESEGKWGSSPPMDNGILNGRAASSSTTSNHTADQAQR

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold01490	452	9965	+

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

molecular_function GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001490s00024448.1	PF00400.27	WD40	349	377	0.049
Glyur001490s00024448.1	PF00400.27	WD40	452	485	5.40E-06
Glyur001490s00024448.1	PF00400.27	WD40	491	527	0.00058
Glyur001490s00024448.1	PF00400.27	WD40	909	946	8.70E-06

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	32.850
SRR1783600	control	33.058
SRR1783602	moderate drought stress	54.558
SRR1811619	moderate drought stress	54.028

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	38.650
DRR006520	Root Summer glycyrrhizin high producing strain	38.274
DRR006521	Root Winter glycyrrhizin high producing strain	47.813
DRR006522	Root Winter glycyrrhizin high producing strain	47.023
DRR006523	Root Summer glycyrrhizin low producing strain	49.312
DRR006524	Root Summer glycyrrhizin low producing strain	49.661
DRR006525	Leaf Summer glycyrrhizin high producing strain	10.792
DRR006526	Leaf Summer glycyrrhizin high producing strain	11.184

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	59.217
SRR2868004	Drought Stress(Tissue:root)	84.851
SRR2967015	Control (Tissue:root)	103.525

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	29.043
SRR9715740	Leave	33.461
SRR9715741	Leave	38.427
SRR9715739	Root	24.853
SRR9715742	Root	67.649
SRR9715743	Root	58.741

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	25.888
SRR8749028	MeJA induced 9h	45.648
SRR8749029	MeJA induced 9h	24.283
SRR8749030	Uninduced	34.785
SRR8749031	Uninduced	59.001
SRR8749032	Uninduced	40.940

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	68.162
SRR8400027	Control-Root	60.048