Gene detail information of Glyur001495s00036176.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G12560.28.00E-58F-box and associated interaction domains-containing protein
NRXP_004507627.10PREDICTED: F-box protein CPR30-like isoform X1 [Cicer arietinum]
Swissprottr|Q9SU30|CPR30_ARATH2.00E-66F-box protein CPR30
trEMBLtr|G7JLM2|G7JLM2_MEDTR0F-box and associated interaction domain protein {ECO:0000313|EMBL:AES92725.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold014953842141311-


Gene family

Gene familysubfamily
Ubiquitin FamilyF-box


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

molecular_function

GO:0005515  protein binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001495s00036176.1PF00646.28F-box2415.50E-10
Glyur001495s00036176.1PF07734.8FBA_12023035.10E-05


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control9.162
SRR1783600control8.625
SRR1783602moderate drought stress23.927
SRR1811619moderate drought stress23.737

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain36.985
DRR006520Root Summer glycyrrhizin high producing strain36.328
DRR006521Root Winter glycyrrhizin high producing strain72.064
DRR006522Root Winter glycyrrhizin high producing strain69.894
DRR006523Root Summer glycyrrhizin low producing strain37.737
DRR006524Root Summer glycyrrhizin low producing strain37.465
DRR006525Leaf Summer glycyrrhizin high producing strain20.402
DRR006526Leaf Summer glycyrrhizin high producing strain20.822

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)23.667
SRR2868004Drought Stress(Tissue:root)27.166
SRR2967015Control (Tissue:root)27.777

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave14.403
SRR9715740Leave14.173
SRR9715741Leave19.986
SRR9715739Root8.061
SRR9715742Root16.269
SRR9715743Root16.392

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h26.041
SRR8749028MeJA induced 9h34.667
SRR8749029MeJA induced 9h32.109
SRR8749030Uninduced28.277
SRR8749031Uninduced33.839
SRR8749032Uninduced34.522

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root39.561
SRR8400027Control-Root38.419

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved