Gene detail information of Glyur001502s00031887.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G14540.17.00E-44nuclear factor Y, subunit B3
NRXP_007154047.12.17E-58hypothetical protein PHAVU_003G086800g [Phaseolus vulgaris]
Swissprottr|O23310|NFYB3_ARATH8.00E-56Nuclear transcription factor Y subunit B-3
trEMBLtr|V7CAV7|V7CAV7_PHAVU8.00E-59Uncharacterized protein {ECO:0000313|EMBL:ESW26041.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold015021640316954-


Gene family

Gene familysubfamily
Transcription Factors FamilyNF-YB


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

cellular_component

GO:0005622  intracellular


molecular_function

GO:0043565  sequence-specific DNA binding

GO:0046982  protein heterodimerization activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001502s00031887.1PF00808.18CBFD_NFYB_HMF21854.00E-27


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control71.780
SRR1783600control72.035
SRR1783602moderate drought stress121.231
SRR1811619moderate drought stress120.138

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain416.958
DRR006520Root Summer glycyrrhizin high producing strain408.823
DRR006521Root Winter glycyrrhizin high producing strain252.514
DRR006522Root Winter glycyrrhizin high producing strain241.401
DRR006523Root Summer glycyrrhizin low producing strain384.876
DRR006524Root Summer glycyrrhizin low producing strain386.992
DRR006525Leaf Summer glycyrrhizin high producing strain16.789
DRR006526Leaf Summer glycyrrhizin high producing strain17.553

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)81.638
SRR2868004Drought Stress(Tissue:root)167.936
SRR2967015Control (Tissue:root)142.356

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave23.468
SRR9715740Leave39.615
SRR9715741Leave34.322
SRR9715739Root89.197
SRR9715742Root95.899
SRR9715743Root93.679

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h16.695
SRR8749028MeJA induced 9h21.384
SRR8749029MeJA induced 9h17.706
SRR8749030Uninduced16.164
SRR8749031Uninduced7.242
SRR8749032Uninduced4.784

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root80.071
SRR8400027Control-Root75.232

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved