Gene detail information of Glyur001502s00031890.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G16360.3 | 3.00E-86 | 5'-AMP-activated protein kinase beta-2 subunit protein |
| NR | XP_004507596.1 | 7.86E-130 | PREDICTED: SNF1-related protein kinase regulatory subunit beta-2-like [Cicer arietinum] |
| Swissprot | tr|Q9SCY5|KINB2_ARATH | 4.00E-108 | SNF1-related protein kinase regulatory subunit beta-2 |
| trEMBL | tr|V7BSR3|V7BSR3_PHAVU | 7.00E-123 | Uncharacterized protein {ECO:0000313|EMBL:ESW19611.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01502 | 25931 | 30198 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | CBM48 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001502s00031890.1 | PF04739.10 | AMPKBI | 165 | 241 | 1.70E-18 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 11.889 |
| SRR1783600 | control | 11.863 |
| SRR1783602 | moderate drought stress | 13.773 |
| SRR1811619 | moderate drought stress | 13.748 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 37.249 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 36.810 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 105.593 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 101.285 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 20.806 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 20.061 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 8.204 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 7.999 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 11.680 |
| SRR2868004 | Drought Stress(Tissue:root) | 11.160 |
| SRR2967015 | Control (Tissue:root) | 11.936 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 13.321 |
| SRR9715740 | Leave | 11.036 |
| SRR9715741 | Leave | 12.124 |
| SRR9715739 | Root | 5.815 |
| SRR9715742 | Root | 7.318 |
| SRR9715743 | Root | 7.664 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 11.025 |
| SRR8749028 | MeJA induced 9h | 7.146 |
| SRR8749029 | MeJA induced 9h | 5.937 |
| SRR8749030 | Uninduced | 6.424 |
| SRR8749031 | Uninduced | 9.632 |
| SRR8749032 | Uninduced | 6.410 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 13.994 |
| SRR8400027 | Control-Root | 12.503 |