Gene detail information of Glyur001505s00031333.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G53025.1 | 9.00E-55 | Ubiquitin-conjugating enzyme family protein |
| NR | XP_006580093.1 | 2.33E-130 | PREDICTED: probable ubiquitin-conjugating enzyme E2 26-like isoform X1 [Glycine max] |
| Swissprot | tr|Q9C918|UBC38_ARATH | 2.00E-65 | Putative ubiquitin-conjugating enzyme E2 38 |
| trEMBL | tr|K7KQ56|K7KQ56_SOYBN | 1.00E-130 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA05G27145.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01505 | 41394 | 46443 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K10581 | UBE2O | EC:2.3.2.24 | Ubiquitin mediated proteolysis | map04120 |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001505s00031333.1 | PF00179.21 | UQ_con | 57 | 113 | 3.10E-07 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 8.504 |
| SRR1783600 | control | 8.740 |
| SRR1783602 | moderate drought stress | 8.290 |
| SRR1811619 | moderate drought stress | 8.056 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 11.313 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 11.586 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 8.982 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 8.647 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 10.568 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 10.435 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 5.623 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 5.358 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 17.904 |
| SRR2868004 | Drought Stress(Tissue:root) | 17.987 |
| SRR2967015 | Control (Tissue:root) | 16.750 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 6.560 |
| SRR9715740 | Leave | 8.759 |
| SRR9715741 | Leave | 9.399 |
| SRR9715739 | Root | 6.980 |
| SRR9715742 | Root | 12.924 |
| SRR9715743 | Root | 11.879 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 9.944 |
| SRR8749028 | MeJA induced 9h | 6.867 |
| SRR8749029 | MeJA induced 9h | 5.881 |
| SRR8749030 | Uninduced | 2.504 |
| SRR8749031 | Uninduced | 1.173 |
| SRR8749032 | Uninduced | 1.812 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 20.150 |
| SRR8400027 | Control-Root | 20.109 |