Gene detail information of Glyur001507s00032442.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G47870.1 | 3.00E-35 | LOB domain-containing protein 27 |
| NR | XP_004497769.1 | 3.53E-50 | PREDICTED: LOB domain-containing protein 22-like [Cicer arietinum] |
| Swissprot | tr|Q9STS6|LBD27_ARATH | 4.00E-40 | LOB domain-containing protein 27 |
| trEMBL | tr|A0A072U5L7|A0A072U5L7_MEDTR | 9.00E-49 | LOB domain protein {ECO:0000313|EMBL:KEH24952.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01507 | 21579 | 24290 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | LOB |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001507s00032442.1 | PF03195.9 | DUF260 | 10 | 107 | 3.40E-36 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.218 |
| SRR1783600 | control | 0.146 |
| SRR1783602 | moderate drought stress | 0.223 |
| SRR1811619 | moderate drought stress | 0.125 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.087 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.393 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.399 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.066 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.083 |
| SRR2967015 | Control (Tissue:root) | 0.300 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.000 |
| SRR9715740 | Leave | 0.000 |
| SRR9715741 | Leave | 0.000 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.066 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.049 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.162 |
| SRR8400027 | Control-Root | 0.121 |