Gene detail information of Glyur001508s00031912.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G08430.11.00E-82SWIB/MDM2 domain;Plus-3;GYF
NRXP_004512648.10PREDICTED: uncharacterized protein At5g08430-like isoform X1 [Cicer arietinum]
Swissprottr|Q9FT92|Y5843_ARATH1.00E-98Uncharacterized protein At5g08430
trEMBLtr|I1L3P9|I1L3P9_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA09G28660.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold015083783244600+


Gene family

Gene familysubfamily
Transcription Factors FamilySWI/SNF-BAF60b


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

biological_process

GO:0006352  DNA-templated transcription, initiation

GO:0016570  histone modification


cellular_component

GO:0005634  nucleus


molecular_function

GO:0003677  DNA binding

GO:0005515  protein binding

"

Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001508s00031912.1PF02201.13SWIB501182.80E-14
Glyur001508s00031912.1PF03126.13Plus-31762741.80E-19
Glyur001508s00031912.1PF02213.11GYF5926357.90E-14


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control16.572
SRR1783600control16.812
SRR1783602moderate drought stress18.888
SRR1811619moderate drought stress19.060

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain23.261
DRR006520Root Summer glycyrrhizin high producing strain22.808
DRR006521Root Winter glycyrrhizin high producing strain29.106
DRR006522Root Winter glycyrrhizin high producing strain28.093
DRR006523Root Summer glycyrrhizin low producing strain28.353
DRR006524Root Summer glycyrrhizin low producing strain28.740
DRR006525Leaf Summer glycyrrhizin high producing strain16.859
DRR006526Leaf Summer glycyrrhizin high producing strain16.899

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)39.763
SRR2868004Drought Stress(Tissue:root)47.706
SRR2967015Control (Tissue:root)44.514

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave27.950
SRR9715740Leave30.578
SRR9715741Leave33.767
SRR9715739Root2.760
SRR9715742Root14.820
SRR9715743Root12.456

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h48.388
SRR8749028MeJA induced 9h38.858
SRR8749029MeJA induced 9h35.612
SRR8749030Uninduced38.738
SRR8749031Uninduced36.488
SRR8749032Uninduced30.996

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root38.999
SRR8400027Control-Root37.450

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved