Gene detail

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Gene detail information of Glyur001518s00034894.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G03770.2	0	Leucine-rich repeat protein kinase family protein
NR	XP_006601550.1	0	PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At3g03770-like [Glycine max]
COG	YP_004775215.1	1.00E-19	RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745]
Swissprot	tr\|Q8LFN2\|Y3037_ARATH	0	Probable inactive leucine-rich repeat receptor-like protein kinase At3g03770 (Precursor)
trEMBL	tr\|A0A072U7B3\|A0A072U7B3_MEDTR	0	LRR receptor-like kinase {ECO:0000313\|EMBL:KEH25567.1}

Sequence

Transcript Sequence

>Glyur001518s00034894.1
ATGGCAAATAGGCTCCATCACACAGTGCTTCTGGTATTGGTTACACTTTTACTTCCAACCTATTACTCAGAGAAACTTCAATCCTCTTCCCACACTCACACCCTTCTAAGAATCAAACGCCTATTGAACTTCCCTTCTGTTCTAAGCAGCTGGAATAGCAACACAGACTTTTGCAACACAGATTCAAAGGCTTCCCTCACTGTTGTGTGCTATGGGGACAACATAACCCAGCTTCACATAGTTGGCGGCGAAACAAGATCTCAGCTTCTTCCGCGGAACTTCTCCATAGACTCCTTTGTCACAACACTGTTGAGGCTTCCAAGTTTGAAAGTCCTAACACTGGTTTCTCTTGGCATATGGGGTCCATTGCCTGGTAAAATTTCCCTCTTGTCATCACTGGAAATAGTTAACATGAGTTCAAATTTTCTGTATGGTTCCATCCCTCAGGAACTTCCACTACTTTCCCATCTCCAAACACTGATTCTTGATGATAACATGTTTTCTGGCCGTCTTCCCGATTGGCTTGATTCTTTTCCGGCGTTAACCGTGTTGANTTTGAGGCATAACTTGTTCAATGGTTCGCTTCCTGATTCGCTAAGTAGCTTGGAGAATCTGAGAGTCCTTTCGCTTTCTCGCAACCATTTTTATGGACCGGTGCCAGATTTGAGCCGTTTGACGAATCTCCAAGTGCTGGAATTGGAGGACAATGCCTTTGGACCCGACTTTCCTAGGCTTGGTAACAAGTTGGTTACTTTAGTACTAAGAAACAACAAGTTCAGGTCTAGTATCCCTGATGAAGTGACCTCATGTTATCAGCTTGAGAAACTTGACATCTCAGAAAACACATTTGTTGGGCCATTTCAGCTAGCATTGTTATCACTTCCTTCCATTACTTATCTCAACATTTCCGGGAACAGATTAACCGGTATGCTTTTCGAGAATGTGTCTTGCAATTCTCAACTAGAAGCAGTGGACTTGTCCTCGAATCTTTTGACCGGGAGCTTACCGGAATGTTTGGTGTCGGATTCGAATGACCGGACTGTCTTGTATGCTAGAAATTGTCTAGAGGAGACAAATCAAAGTCAAAATCAACATGAACTGCCCTTTTGCCACACTGAAGCCTTAGCTGTGGGAATAGTGTCTGAGAGAAAGAAACACAACAAACAAGTATCTAAAGCAGTCCTTTCCCTTGGGATAGTAGGTGGAACTTTTGGAGGACTTGCACTTGTTGCACTGCTTTTCTTTCTTATTAGAAGAGCTAATGCCAAAAGCATAGTGAATAATCCTCCAACAAAGTTGGTATCAGAAAATGCAGCTTCTGGATACACCTCCAAGTTACTCTCTGATCCAAGGTATGTATCTCAAACAATGAAGTTTGGAACAGTTGGCCTGCCACCTTATCGAGCTTTCTCACTGGAAGAGATTGTGGCAGCTACTAACAACTTTGACACAGCTTCTTATATGGGTGAAGGCCAACTGAAGGATGGTTCACTTGTTGCCATTAGAAGTGTAAAAATGACCAAAAGCTACAACACTCAAGACTTCATGCACCACATAGAGCTCATATCCAAATACAGGCATCTTAATTTAGTCAGTGTTCTTGGACACTGCTTTGAATGTTATGTAGATGATTCAAATGTCAGCAGAATATTTATTGTGTTTGAGTATGTTCCAAATGGCACACTCAAGAGCTGGATCTCAGATGTGCATTATAGAAAGTCACTGACTTGGACCCAACGCATAGCAGCTGCAACTGGAGTAGCAAAGGGCATCCAATTTTTGCATACAGGGATTGTCCCTGGTGTATATTCAAACAATGTCAAAATTGCAGATGTTGGGCAAGGAAATCCTTTCAGTTTCAAAAGTCCCAGCATTAACAAAAGTGTGAAAAATGAAGATAAGGCTGATATATATGACTTTGGGGTGATAATGATGGAACTCATTCTAGGAAGGACAATAAAGTCAAAGNATGTGGACACTTTGAAGGATCTGTTGCAAGCAAGCATAACAGCTGATGATGAAGCTAGGAGGAGCATTATAGATCCGGCGGTTCGCAAGGCATGCTTGGATCAATCATTGAAGACAATGATGGAGATTTGTGTGAGGTGCCTTGTTAAAGAACCAGCAGATAGGCCTTCTATAGAGGATGTTTTGTGGAATTTGCAGTTTGCTGCTCAAGTCCAGGATGCATGGAGAGGGGACTCTCTTGTCGACACGTTTCTATAA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold01518	11605	20407	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.15.2

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function GO:0004672 protein kinase activity GO:0005524 ATP binding GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001518s00034894.1	PF08263.7	LRRNT_2	33	59	0.0031
Glyur001518s00034894.1	PF07714.12	Pkinase_Tyr	495	596	5.40E-12
Glyur001518s00034894.1	PF00069.20	Pkinase	621	718	0.00017

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.887
SRR1783600	control	2.877
SRR1783602	moderate drought stress	0.770
SRR1811619	moderate drought stress	0.759

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.423
DRR006520	Root Summer glycyrrhizin high producing strain	4.340
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	2.364
DRR006524	Root Summer glycyrrhizin low producing strain	2.187
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.759
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.882

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	8.472
SRR2868004	Drought Stress(Tissue:root)	5.055
SRR2967015	Control (Tissue:root)	3.891

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	3.383
SRR9715740	Leave	1.293
SRR9715741	Leave	1.075
SRR9715739	Root	0.772
SRR9715742	Root	5.378
SRR9715743	Root	4.195

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.390
SRR8749028	MeJA induced 9h	0.635
SRR8749029	MeJA induced 9h	0.196
SRR8749030	Uninduced	0.253
SRR8749031	Uninduced	0.195
SRR8749032	Uninduced	0.327

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	3.666
SRR8400027	Control-Root	4.741