Gene detail information of Glyur001518s00034895.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G03760.1 | 1.00E-41 | LOB domain-containing protein 20 |
| NR | KHN05749.1 | 1.35E-101 | LOB domain-containing protein 20 [Glycine soja] |
| Swissprot | tr|Q9SRV3|LBD20_ARATH | 1.00E-66 | LOB domain-containing protein 20 |
| trEMBL | tr|K7LI56|K7LI56_SOYBN | 1.00E-100 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA10G11031.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01518 | 21815 | 22933 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | LOB |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001518s00034895.1 | PF03195.9 | DUF260 | 33 | 133 | 1.10E-36 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.249 |
| SRR1783600 | control | 0.375 |
| SRR1783602 | moderate drought stress | 0.764 |
| SRR1811619 | moderate drought stress | 0.648 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.630 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.525 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.403 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.150 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.428 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.504 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.292 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.652 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 1.160 |
| SRR2868004 | Drought Stress(Tissue:root) | 1.985 |
| SRR2967015 | Control (Tissue:root) | 1.662 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 1.131 |
| SRR9715740 | Leave | 0.506 |
| SRR9715741 | Leave | 1.441 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.249 |
| SRR9715743 | Root | 0.166 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.626 |
| SRR8749028 | MeJA induced 9h | 1.257 |
| SRR8749029 | MeJA induced 9h | 0.746 |
| SRR8749030 | Uninduced | 0.583 |
| SRR8749031 | Uninduced | 0.383 |
| SRR8749032 | Uninduced | 2.149 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 1.061 |
| SRR8400027 | Control-Root | 1.252 |