Gene detail information of Glyur001518s00034896.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G03750.29.00E-87SET domain protein 20
NRXP_003555385.22.29E-165PREDICTED: histone-lysine N-methyltransferase SUVR3-like [Glycine max]
COGYP_004237006.14.00E-13nuclear protein SET [Acidovorax avenae subsp. avenae ATCC 19860]
Swissprottr|Q9SRV2|SUVR3_ARATH3.00E-98Histone-lysine N-methyltransferase SUVR3
trEMBLtr|I1NGV6|I1NGV6_SOYBN9.00E-166Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA20G30000.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold015182388226690-


Gene family

Gene familysubfamily
Transcription Factors FamilySET
Ubiquitin FamilyF-box


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K11433SETMAR EC:2.1.1.43 Lysine degradation map00310


Gene Ontology

molecular_function

GO:0005515  protein binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001518s00034896.1PF00856.23SET2043251.60E-24


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control7.431
SRR1783600control7.160
SRR1783602moderate drought stress10.672
SRR1811619moderate drought stress10.282

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain9.745
DRR006520Root Summer glycyrrhizin high producing strain10.373
DRR006521Root Winter glycyrrhizin high producing strain19.735
DRR006522Root Winter glycyrrhizin high producing strain18.175
DRR006523Root Summer glycyrrhizin low producing strain12.064
DRR006524Root Summer glycyrrhizin low producing strain12.021
DRR006525Leaf Summer glycyrrhizin high producing strain4.180
DRR006526Leaf Summer glycyrrhizin high producing strain3.817

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)9.193
SRR2868004Drought Stress(Tissue:root)10.277
SRR2967015Control (Tissue:root)9.529

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave5.111
SRR9715740Leave3.903
SRR9715741Leave7.644
SRR9715739Root4.985
SRR9715742Root5.675
SRR9715743Root6.700

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h7.092
SRR8749028MeJA induced 9h6.003
SRR8749029MeJA induced 9h3.936
SRR8749030Uninduced5.218
SRR8749031Uninduced2.254
SRR8749032Uninduced3.510

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root10.767
SRR8400027Control-Root8.719

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved