Gene detail information of Glyur001519s00034465.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G33420.1 | 0 | RING/FYVE/PHD zinc finger superfamily protein |
| NR | KHN11645.1 | 0 | PHD finger protein [Glycine soja] |
| Swissprot | tr|Q9C810|Y1342_ARATH | 0 | PHD finger protein At1g33420 |
| trEMBL | tr|V7ACS3|V7ACS3_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW03317.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01519 | 31120 | 35381 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | PHD |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001519s00034465.1 | PF00628.24 | PHD | 570 | 616 | 5.10E-09 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 13.987 |
| SRR1783600 | control | 13.901 |
| SRR1783602 | moderate drought stress | 22.856 |
| SRR1811619 | moderate drought stress | 23.097 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 23.042 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 23.569 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 47.178 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 45.342 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 21.734 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 21.684 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 8.317 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 8.303 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 19.319 |
| SRR2868004 | Drought Stress(Tissue:root) | 21.380 |
| SRR2967015 | Control (Tissue:root) | 22.804 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 5.850 |
| SRR9715740 | Leave | 4.689 |
| SRR9715741 | Leave | 6.752 |
| SRR9715739 | Root | 5.386 |
| SRR9715742 | Root | 10.358 |
| SRR9715743 | Root | 8.857 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 22.620 |
| SRR8749028 | MeJA induced 9h | 18.686 |
| SRR8749029 | MeJA induced 9h | 13.707 |
| SRR8749030 | Uninduced | 13.418 |
| SRR8749031 | Uninduced | 27.433 |
| SRR8749032 | Uninduced | 17.710 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 19.870 |
| SRR8400027 | Control-Root | 17.959 |