Gene detail information of Glyur001519s00034465.2


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G33420.10RING/FYVE/PHD zinc finger superfamily protein
NRKHN11645.10PHD finger protein [Glycine soja]
Swissprottr|Q9C810|Y1342_ARATH0PHD finger protein At1g33420
trEMBLtr|V7ACS3|V7ACS3_PHAVU0Uncharacterized protein {ECO:0000313|EMBL:ESW03317.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold015193112035381+


Gene family

Gene familysubfamily
Transcription Factors FamilyPHD


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

molecular_function

GO:0005515  protein binding

GO:0008270  zinc ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001519s00034465.2PF00628.24PHD5616075.00E-09


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control13.987
SRR1783600control13.901
SRR1783602moderate drought stress22.856
SRR1811619moderate drought stress23.097

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain23.042
DRR006520Root Summer glycyrrhizin high producing strain23.569
DRR006521Root Winter glycyrrhizin high producing strain47.178
DRR006522Root Winter glycyrrhizin high producing strain45.342
DRR006523Root Summer glycyrrhizin low producing strain21.734
DRR006524Root Summer glycyrrhizin low producing strain21.684
DRR006525Leaf Summer glycyrrhizin high producing strain8.317
DRR006526Leaf Summer glycyrrhizin high producing strain8.303

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)19.319
SRR2868004Drought Stress(Tissue:root)21.380
SRR2967015Control (Tissue:root)22.804

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave5.850
SRR9715740Leave4.689
SRR9715741Leave6.752
SRR9715739Root5.386
SRR9715742Root10.358
SRR9715743Root8.857

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h22.620
SRR8749028MeJA induced 9h18.686
SRR8749029MeJA induced 9h13.707
SRR8749030Uninduced13.418
SRR8749031Uninduced27.433
SRR8749032Uninduced17.710

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root19.870
SRR8400027Control-Root17.959

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved