Gene detail information of Glyur001521s00036665.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G07360.1 | 9.00E-138 | plant U-box 9 |
| NR | XP_007140699.1 | 0 | hypothetical protein PHAVU_008G134400g [Phaseolus vulgaris] |
| COG | YP_001957949.1 | 5.00E-12 | hypothetical protein Aasi_0849 [Candidatus Amoebophilus asiaticus 5a2] |
| Swissprot | tr|Q9SRT0|PUB9_ARATH | 4.00E-178 | U-box domain-containing protein 9 |
| trEMBL | tr|V7B768|V7B768_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW12693.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01521 | 843 | 4313 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | U_box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001521s00036665.1 | PF04564.10 | U-box | 87 | 155 | 5.40E-23 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 7.219 |
| SRR1783600 | control | 7.169 |
| SRR1783602 | moderate drought stress | 15.221 |
| SRR1811619 | moderate drought stress | 15.122 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 18.838 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 18.480 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 6.508 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 6.338 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 19.293 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 19.563 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.905 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.790 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 18.974 |
| SRR2868004 | Drought Stress(Tissue:root) | 22.160 |
| SRR2967015 | Control (Tissue:root) | 29.750 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 5.816 |
| SRR9715740 | Leave | 0.883 |
| SRR9715741 | Leave | 1.590 |
| SRR9715739 | Root | 3.746 |
| SRR9715742 | Root | 13.769 |
| SRR9715743 | Root | 13.281 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.534 |
| SRR8749028 | MeJA induced 9h | 3.076 |
| SRR8749029 | MeJA induced 9h | 1.775 |
| SRR8749030 | Uninduced | 0.177 |
| SRR8749031 | Uninduced | 0.071 |
| SRR8749032 | Uninduced | 0.079 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 28.009 |
| SRR8400027 | Control-Root | 37.209 |