Gene detail information of Glyur001527s00038269.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G69830.10alpha-amylase-like 3
NRXP_003532050.10PREDICTED: alpha-amylase 3, chloroplastic-like [Glycine max]
COGYP_003951996.18.00E-103alpha-amylase [Stigmatella aurantiaca DW4/3-1]
Swissprottr|Q94A41|AMY3_ARATH0Alpha-amylase 3, chloroplastic (Precursor)
trEMBLtr|I1KXQ4|I1KXQ4_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA08G40810.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold015272421834026-


Gene family

Gene familysubfamily
Carbohydrate-Active enzymes FamilyCBM45,CBM45,GH13


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

biological_process

GO:0005975  carbohydrate metabolic process


molecular_function

GO:0003824  catalytic activity

GO:0004556  alpha-amylase activity

GO:0005509  calcium ion binding

GO:0043169  cation binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001527s00038269.1PF00128.19Alpha-amylase5538415.40E-24
Glyur001527s00038269.1PF07821.7Alpha-amyl_C28619201.90E-22


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control26.750
SRR1783600control26.716
SRR1783602moderate drought stress31.592
SRR1811619moderate drought stress30.903

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain24.194
DRR006520Root Summer glycyrrhizin high producing strain23.692
DRR006521Root Winter glycyrrhizin high producing strain31.147
DRR006522Root Winter glycyrrhizin high producing strain30.500
DRR006523Root Summer glycyrrhizin low producing strain38.083
DRR006524Root Summer glycyrrhizin low producing strain38.125
DRR006525Leaf Summer glycyrrhizin high producing strain120.308
DRR006526Leaf Summer glycyrrhizin high producing strain120.134

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)34.450
SRR2868004Drought Stress(Tissue:root)29.052
SRR2967015Control (Tissue:root)29.564

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave50.434
SRR9715740Leave69.473
SRR9715741Leave63.463
SRR9715739Root3.679
SRR9715742Root12.245
SRR9715743Root9.619

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h12.061
SRR8749028MeJA induced 9h17.979
SRR8749029MeJA induced 9h6.891
SRR8749030Uninduced10.141
SRR8749031Uninduced6.895
SRR8749032Uninduced5.373

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root51.419
SRR8400027Control-Root43.876

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved