Gene detail information of Glyur001528s00028670.2 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G76900.2 | 1.00E-165 | tubby like protein 1 |
| NR | XP_004485526.1 | 0 | PREDICTED: tubby-like F-box protein 8-like [Cicer arietinum] |
| Swissprot | tr|Q2QXB2|TLP14_ORYSJ | 0 | Tubby-like F-box protein 14 |
| trEMBL | tr|I1MDS7|I1MDS7_SOYBN | 0 | Tubby-like F-box protein {ECO:0000256|RuleBase:RU361125} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01528 | 59776 | 64477 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | TUB |
| Ubiquitin Family | F-box |
| EAR motif-containing Proteins | TUB |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001528s00028670.2 | PF00646.28 | F-box | 52 | 105 | 8.20E-10 |
| Glyur001528s00028670.2 | PF01167.13 | Tub | 117 | 422 | 1.30E-116 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 58.199 |
| SRR1783600 | control | 58.520 |
| SRR1783602 | moderate drought stress | 60.368 |
| SRR1811619 | moderate drought stress | 59.789 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 45.204 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 44.889 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 54.059 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 53.091 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 54.910 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 54.638 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 25.929 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 26.055 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 72.774 |
| SRR2868004 | Drought Stress(Tissue:root) | 75.191 |
| SRR2967015 | Control (Tissue:root) | 75.173 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 44.864 |
| SRR9715740 | Leave | 49.089 |
| SRR9715741 | Leave | 55.124 |
| SRR9715739 | Root | 43.782 |
| SRR9715742 | Root | 51.378 |
| SRR9715743 | Root | 48.090 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 72.573 |
| SRR8749028 | MeJA induced 9h | 67.961 |
| SRR8749029 | MeJA induced 9h | 50.505 |
| SRR8749030 | Uninduced | 54.709 |
| SRR8749031 | Uninduced | 33.068 |
| SRR8749032 | Uninduced | 35.748 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 67.173 |
| SRR8400027 | Control-Root | 65.056 |