Gene detail information of Glyur001532s00034686.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G48910.1 | 3.00E-87 | Flavin-containing monooxygenase family protein |
| NR | KEH35392.1 | 0 | flavin containing monooxygenase YUCCA10-like protein [Medicago truncatula] |
| COG | NP_108142.1 | 2.00E-46 | dimethylaniline monooxygenase [Mesorhizobium loti MAFF303099] |
| Swissprot | tr|Q9FVQ0|YUC10_ARATH | 5.00E-117 | Probable indole-3-pyruvate monooxygenase YUCCA10 |
| trEMBL | tr|A0A072V0T1|A0A072V0T1_MEDTR | 0 | Flavin-containing monooxygenase {ECO:0000256|RuleBase:RU361177} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01532 | 8153 | 14814 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K11816 | YUCCA | EC:1.14.13.168 | Tryptophan metabolism | map00380 |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001532s00034686.1 | PF13738.1 | Pyr_redox_3 | 8 | 177 | 2.10E-11 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.109 |
| SRR1783600 | control | 0.107 |
| SRR1783602 | moderate drought stress | 0.079 |
| SRR1811619 | moderate drought stress | 0.112 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.010 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.042 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.100 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.179 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.067 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.096 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.006 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.005 |
| SRR2967015 | Control (Tissue:root) | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.000 |
| SRR9715740 | Leave | 0.000 |
| SRR9715741 | Leave | 0.000 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.053 |
| SRR8749028 | MeJA induced 9h | 0.138 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.013 |
| SRR8749032 | Uninduced | 0.023 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.040 |
| SRR8400027 | Control-Root | 0.061 |