Gene detail information of Glyur001534s00033639.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G34370.2 | 2.00E-49 | C2H2 and C2HC zinc fingers superfamily protein |
| NR | XP_004502417.1 | 2.31E-139 | PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like isoform X2 [Cicer arietinum] |
| Swissprot | tr|Q9C8N5|STOP1_ARATH | 2.00E-69 | Protein SENSITIVE TO PROTON RHIZOTOXICITY 1 |
| trEMBL | tr|I1MYR4|I1MYR4_SOYBN | 4.00E-137 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA18G02010.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01534 | 608 | 1636 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | C2H2 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001534s00033639.1 | PF00096.21 | zf-C2H2 | 134 | 155 | 0.00011 |
| Glyur001534s00033639.1 | PF00096.21 | zf-C2H2 | 224 | 247 | 0.027 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.994 |
| SRR1783600 | control | 5.920 |
| SRR1783602 | moderate drought stress | 4.753 |
| SRR1811619 | moderate drought stress | 5.107 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 6.062 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 6.346 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.800 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.886 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.698 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.509 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.296 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.104 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 9.216 |
| SRR2868004 | Drought Stress(Tissue:root) | 11.688 |
| SRR2967015 | Control (Tissue:root) | 10.946 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 7.129 |
| SRR9715740 | Leave | 6.551 |
| SRR9715741 | Leave | 7.648 |
| SRR9715739 | Root | 17.821 |
| SRR9715742 | Root | 10.917 |
| SRR9715743 | Root | 11.196 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.695 |
| SRR8749028 | MeJA induced 9h | 1.702 |
| SRR8749029 | MeJA induced 9h | 1.993 |
| SRR8749030 | Uninduced | 1.372 |
| SRR8749031 | Uninduced | 0.323 |
| SRR8749032 | Uninduced | 0.794 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 7.731 |
| SRR8400027 | Control-Root | 6.028 |