Gene detail information of Glyur001534s00033641.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G39910.1 | 1.00E-74 | ubiquitin-specific protease 3 |
| NR | XP_006601733.1 | 4.39E-103 | PREDICTED: uncharacterized protein LOC100305765 isoform X1 [Glycine max] |
| Swissprot | tr|O24454|UBP3_ARATH | 1.00E-91 | Ubiquitin carboxyl-terminal hydrolase 3 |
| trEMBL | tr|I1MYR5|I1MYR5_SOYBN | 2.00E-103 | Ubiquitin carboxyl-terminal hydrolase {ECO:0000256|RuleBase:RU004435} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01534 | 9591 | 14794 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | USP |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001534s00033641.1 | PF00443.24 | UCH | 22 | 147 | 1.60E-31 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 11.180 |
| SRR1783600 | control | 11.279 |
| SRR1783602 | moderate drought stress | 10.343 |
| SRR1811619 | moderate drought stress | 10.447 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 16.092 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 15.590 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 16.644 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 16.494 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 16.819 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 17.003 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 6.778 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 6.774 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 17.121 |
| SRR2868004 | Drought Stress(Tissue:root) | 20.776 |
| SRR2967015 | Control (Tissue:root) | 17.677 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 10.689 |
| SRR9715740 | Leave | 15.554 |
| SRR9715741 | Leave | 16.033 |
| SRR9715739 | Root | 1.109 |
| SRR9715742 | Root | 9.637 |
| SRR9715743 | Root | 8.250 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 13.793 |
| SRR8749028 | MeJA induced 9h | 12.726 |
| SRR8749029 | MeJA induced 9h | 8.048 |
| SRR8749030 | Uninduced | 12.425 |
| SRR8749031 | Uninduced | 10.264 |
| SRR8749032 | Uninduced | 5.734 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 18.479 |
| SRR8400027 | Control-Root | 19.617 |