Gene detail information of Glyur001537s00028908.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G16850.1 | 7.00E-161 | Pectin lyase-like superfamily protein |
| NR | XP_006597719.1 | 0 | PREDICTED: probable polygalacturonase-like isoform X1 [Glycine max] |
| COG | YP_001179193.1 | 3.00E-50 | galacturan 1,4-alpha-galacturonidase [Caldicellulosiruptor saccharolyticus DSM 8903] |
| Swissprot | tr|A7PZL3|PGLR_VITVI | 3.00E-133 | Probable polygalacturonase |
| trEMBL | tr|I1MGK4|I1MGK4_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA15G15690.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01537 | 26460 | 29730 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH28 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001537s00028908.1 | PF00295.12 | Glyco_hydro_28 | 128 | 404 | 5.40E-30 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.227 |
| SRR1783600 | control | 5.188 |
| SRR1783602 | moderate drought stress | 3.068 |
| SRR1811619 | moderate drought stress | 3.359 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 9.183 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 8.903 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.062 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.114 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 22.078 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 22.314 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.032 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.817 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 24.458 |
| SRR2868004 | Drought Stress(Tissue:root) | 21.608 |
| SRR2967015 | Control (Tissue:root) | 15.961 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 9.740 |
| SRR9715740 | Leave | 7.765 |
| SRR9715741 | Leave | 4.975 |
| SRR9715739 | Root | 2.963 |
| SRR9715742 | Root | 2.561 |
| SRR9715743 | Root | 3.434 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 26.781 |
| SRR8749028 | MeJA induced 9h | 24.416 |
| SRR8749029 | MeJA induced 9h | 18.420 |
| SRR8749030 | Uninduced | 62.146 |
| SRR8749031 | Uninduced | 18.894 |
| SRR8749032 | Uninduced | 19.749 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 12.224 |
| SRR8400027 | Control-Root | 15.020 |