Gene detail

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Gene detail information of Glyur001539s00042744.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G68560.1	6.00E-111	alpha-xylosidase 1
NR	XP_003531929.1	1.40E-171	PREDICTED: alpha-xylosidase 1-like [Glycine max]
COG	YP_007244211.1	3.00E-10	alpha-glucosidase [Thioflavicoccus mobilis 8321]
Swissprot	tr\|Q9S7Y7\|XYL1_ARATH	2.00E-139	Alpha-xylosidase 1 (Precursor)
trEMBL	tr\|I1KWV4\|I1KWV4_SOYBN	5.00E-172	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA08G31890.1}

Sequence

Transcript Sequence

>Glyur001539s00042744.1
ATGGTTTGTCCTCACCGTCTAGCTGCTCTGNCTGGGGTGAGTTCTTCTTCATCAAATGCCACCAAAATTGGCAAAGGCTACCGTCTTATCTCCGTTGAAGAGACCTCGGATGGTGGCCTTGTGGGTTTCCTTCAAGTTAAGCAGAAAACCAAAATCTATGGCCCTGATATTCCCCTTCTACGGTTCTATGCCAAACCTTGTTCATTGCACGAGGCAGAGAACCGTTTGAGGGTACACATAACCGACGCGAAGAAGCAAAGATGGGAGGTTCCCTACAACCTTTTACCAAGGGAGCAACCACCGACATTGACTCAGACCATTGGATTCGGAAGGTCCATTAAGAACCCTATAGCAGTCTCAGAGTACTCTGGTTCTGAGCTTCTTTTGAGCTACACTTCAGACCCATTTAGCTTCGCAGTGAAAAGGAAGTCAAATGGTGAGACCCTTTTCAATTCTAGCTCAGATGGTNCAGACCCTTTTAGCTCACTGGTTTTCAAGGACCAGTACCTTGAGATTTCTACCAAATTGCCTAAAGATGCATCTTTGTATGGGTTGGGAGAGAACACACAGCCACATGGGATCAAGTTGTACCCAAGTGACCCTTACACTTTGTACACCACCGACATATCAGCAATTAACCTCAATGCTGATCTNTATGGATCACACCCTGTGTACATGGATCTCAGAAACAATGGTGGGAAAGCCTCTGCACACGCTGTTCTGCTGCTGAATAGCAATGGGATGGATGTGTTTTACAGAGGAACGTCTCTCACCTACAAGGTCATTGGAGGTGTCTTCGATTTCTACTTCTTTTCTGGCCCAACGCCTTTGAATGTTGTTGATCAGTATACTTCCCTAATTGGCAGACCCGCTCCAATGCCTTACTGGGCTTTTGTTGTGAAAACTGGGGATTCCACCAATGCAGATGGGGATATCACAATCTATCAGTGGTAGAAGATGTTGTCGAGAATTACAAGAAGGCTCAAATCCCACTTGATGTTATCTGGAACGACGATGATCACATGGACGGACACAAGGACTTNACACTNAATCCAATCAACTACCCTCGTCCNAAGCTTTTAAACTTCCTGGACAAGATACACAGCATGGGCATGAAATACATNGTCATCATTGACCCTGGAATCGCTGTTAACTCCAGCTATGGTGTGTACCAAAGGGGAATAGCCAATGATGTTTTCATCAAGTATGAAGGGGAGCCCTTCTTGGCTCAGGTTTGGCCAGGNGCAGTCAACTTCCCCGATTTCCTCAACCCGAAGACGGTTTCTTGGTGGGCTGATGAGATCCGCCGCTTCCATGAACTGGTACCTGTTGATGGTCTATGGATTGACATGAATGAGGCTTCCAACTTCTGTTCTGGGAAGTGCAAAATCCCAAAGGGAAAGCAGTGCCCGACTGGAACAGGACCCGGATGGATTTGTTGCCTGGAGTGCAAGAACATCACCAAAACACGATGGGANGATCCTCCATACAAAATCAATGCCTCAGGAATACAAGCTCCGATTGGGTTCAAAACAATAGCCACTAGTGCAGTCCACTACAACGGCNTCTTGGAGTATGATGCCCACAGTATTTATGGTTTCTCTCAATCCATTGCAACTCACAAGGGCCTTGTAGGGATTGAAGGCAAAAGGCCTTTTATTCTGTCCCGCTCCACTTATGTGGGTTCAGGCAAATACGCAGCACATTGGACTGGTGACAATCAAGGGACATGGGAGAACTTGAGGTACTCAATATCCACAATGCTGAATTTCGGTATCTTTGGTGTCCCCATGGTGGGTTCAGATATATGTGGGTTCTATCCACAACCCACTGAAGAACTATGCAATAGATGGATTGAAGTAGGTGCATTCTACCCATTTTCAAGGGATCATGCAAACTACTACTCCCCTAGACAGGAGCTTTACCAATGGGCATCGGTTGCCGAGTCAGCTAGAAATGCTTTGGGCATAAGATACAAGATACTCCCCTATCTCTACACCCTGAACTATGAGGCTCATGTTAGTGGAGCCCCAATTGCAAGACCTCTTTTCTTCTCATTCCCAACTTACACCNAATGTTACGGCCTCAGCACCCAGTTCTTGCTAGGGAGCAGTCTCATGATATCNCCGGTGCTNGAGCAGGGGAAAACACAAGTGAAAGCTTTGTTTCCACCTGGAAGCTGGTACAGTTTGCTTGATTGGACACATACCATTACATCAAAGGATGGGGTGTATGTTACCCTTGATGCTCCTCTTCATGTGGTCAATGTGCATTTATATCAGAACACCATCCTTCCAATGCAGCAGGGTGGAATGATCTCTAAGGTTGCTAGAATGACACCCTTCAGCCTCATTGTGACCTTCCCAGCAGGGGCAACAGAAGGGGAAGCTAAAGGGAACCTTTTCCTTGATGAAGATGAACTTCCAGAGATGAAGCTTGGTAATGGATACTCAACATATATTGATTTCCATGCTACTGTNAAACAAGGAGCTGTCAAGGTTTGGTCACAAGTGCAAGAAGGGAAGTTTGCCTTGGATAAAGGTTGGGTTATTGAATCTGTTTNTGTGTTGGGATTGGATGGACTTGGTGGAGGAGTGTCTGCACTTGAGATAGATGGAAAGCCACTAATGGGTACTGTCTCAGATGTGAAAGTGAGTACATCTGAACATGAGCACCCATCCGGTCAGGTAAATGGAGAGAATAAGACAGTGATGGTAGCTTTGAAGGGCTTGAAGATCCCTGTAGGTAAAAACTTTGCTATGACATGGAAGATGGGATGATAAAATTAATTAATTGATATTGTCTCATCTTCTTAATTATGAATTTGTCGTGTTCTTTTTTTCTTTTCTTTTTTTACAATTCTTGCAGGCGTTGTAAGGGAGGGAGAGATGAGGTTAGAATTATGGTCGCTATTTTCCATTTTAATAAGCCAATGCAACAGGCTTATTGGTTCAAATCTGAGTGTTATTTTAGTTTTAAGCACCTGATGAGTTGAAACTTCTTGTCATT

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold01539	11386	16963	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GH31

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0005975 carbohydrate metabolic process

molecular_function GO:0003824 catalytic activity GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds GO:0030246 carbohydrate binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001539s00042744.1	PF01055.21	Glyco_hydro_31	269	298	1.10E-06

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	45.687
SRR1783600	control	45.971
SRR1783602	moderate drought stress	16.963
SRR1811619	moderate drought stress	16.684

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	46.693
DRR006520	Root Summer glycyrrhizin high producing strain	46.445
DRR006521	Root Winter glycyrrhizin high producing strain	0.185
DRR006522	Root Winter glycyrrhizin high producing strain	0.180
DRR006523	Root Summer glycyrrhizin low producing strain	11.813
DRR006524	Root Summer glycyrrhizin low producing strain	11.655
DRR006525	Leaf Summer glycyrrhizin high producing strain	18.924
DRR006526	Leaf Summer glycyrrhizin high producing strain	18.973

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	73.443
SRR2868004	Drought Stress(Tissue:root)	17.301
SRR2967015	Control (Tissue:root)	25.044

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	13.865
SRR9715740	Leave	2.747
SRR9715741	Leave	4.278
SRR9715739	Root	21.217
SRR9715742	Root	17.166
SRR9715743	Root	17.313

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	7.700
SRR8749028	MeJA induced 9h	1.485
SRR8749029	MeJA induced 9h	1.598
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.025
SRR8749032	Uninduced	0.113

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	40.342
SRR8400027	Control-Root	40.208