Gene detail information of Glyur001541s00033558.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G23090.2 | 1.00E-69 | nuclear factor Y, subunit B13 |
| NR | XP_004488351.1 | 3.97E-106 | PREDICTED: protein Dr1 homolog [Cicer arietinum] |
| Swissprot | tr|P49592|NC2B_ARATH | 4.00E-88 | Protein Dr1 homolog |
| trEMBL | tr|I3S9B6|I3S9B6_MEDTR | 4.00E-105 | Uncharacterized protein {ECO:0000313|EMBL:AFK36858.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01541 | 11686 | 19276 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | NF-YB |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001541s00033558.1 | PF00808.18 | CBFD_NFYB_HMF | 14 | 79 | 3.90E-22 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 69.258 |
| SRR1783600 | control | 68.875 |
| SRR1783602 | moderate drought stress | 77.283 |
| SRR1811619 | moderate drought stress | 77.698 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 59.726 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 59.211 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 61.347 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 59.797 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 94.060 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 93.438 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 35.933 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 35.359 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 58.109 |
| SRR2868004 | Drought Stress(Tissue:root) | 83.021 |
| SRR2967015 | Control (Tissue:root) | 101.678 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 73.857 |
| SRR9715740 | Leave | 64.687 |
| SRR9715741 | Leave | 86.289 |
| SRR9715739 | Root | 34.793 |
| SRR9715742 | Root | 39.564 |
| SRR9715743 | Root | 40.277 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 127.908 |
| SRR8749028 | MeJA induced 9h | 184.542 |
| SRR8749029 | MeJA induced 9h | 176.986 |
| SRR8749030 | Uninduced | 215.900 |
| SRR8749031 | Uninduced | 234.104 |
| SRR8749032 | Uninduced | 228.476 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 61.261 |
| SRR8400027 | Control-Root | 60.221 |