Gene detail information of Glyur001542s00036588.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G34215.2 | 1.00E-50 | Domain of unknown function (DUF303) |
| NR | XP_003589125.1 | 4.27E-93 | hypothetical protein MTR_1g018750 [Medicago truncatula] |
| COG | YP_004775077.1 | 2.00E-09 | hypothetical protein [Cyclobacterium marinum DSM 745] |
| Swissprot | tr|Q8L9J9|CAES_ARATH | 1.00E-61 | Probable carbohydrate esterase At4g34215 |
| trEMBL | tr|G7I2A7|G7I2A7_MEDTR | 2.00E-93 | Carbohydrate esterase plant-like protein {ECO:0000313|EMBL:AES59376.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01542 | 55978 | 59991 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | CE6 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001542s00036588.1 | PF03629.13 | DUF303 | 33 | 159 | 8.60E-20 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.110 |
| SRR1783600 | control | 4.243 |
| SRR1783602 | moderate drought stress | 2.880 |
| SRR1811619 | moderate drought stress | 2.261 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.956 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.867 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.865 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.605 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.166 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.165 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 18.447 |
| SRR2868004 | Drought Stress(Tissue:root) | 26.383 |
| SRR2967015 | Control (Tissue:root) | 13.554 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.219 |
| SRR9715740 | Leave | 0.059 |
| SRR9715741 | Leave | 0.000 |
| SRR9715739 | Root | 5.474 |
| SRR9715742 | Root | 13.870 |
| SRR9715743 | Root | 11.007 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.145 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.325 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 72.061 |
| SRR8400027 | Control-Root | 126.557 |