Gene detail information of Glyur001542s00036591.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G24210.1 | 2.00E-34 | F-box family protein |
| NR | NP_001238371.1 | 1.90E-60 | uncharacterized protein LOC100527591 [Glycine max] |
| Swissprot | tr|Q9STX3|GID2_ARATH | 8.00E-50 | F-box protein GID2 |
| trEMBL | tr|C6T4T3|C6T4T3_SOYBN | 7.00E-61 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA04G04540.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01542 | 65782 | 66330 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001542s00036591.1 | PF12937.2 | F-box-like | 49 | 91 | 2.90E-07 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 31.834 |
| SRR1783600 | control | 31.243 |
| SRR1783602 | moderate drought stress | 41.089 |
| SRR1811619 | moderate drought stress | 39.870 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 34.684 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 34.391 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 8.950 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 9.130 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 32.993 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 31.988 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 34.991 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 32.405 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 39.670 |
| SRR2868004 | Drought Stress(Tissue:root) | 24.635 |
| SRR2967015 | Control (Tissue:root) | 31.816 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 19.551 |
| SRR9715740 | Leave | 29.909 |
| SRR9715741 | Leave | 19.611 |
| SRR9715739 | Root | 41.513 |
| SRR9715742 | Root | 38.250 |
| SRR9715743 | Root | 37.816 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 26.683 |
| SRR8749028 | MeJA induced 9h | 13.324 |
| SRR8749029 | MeJA induced 9h | 22.370 |
| SRR8749030 | Uninduced | 13.735 |
| SRR8749031 | Uninduced | 3.755 |
| SRR8749032 | Uninduced | 9.498 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 21.014 |
| SRR8400027 | Control-Root | 25.889 |