Gene detail information of Glyur001544s00035564.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G09760.1 | 4.00E-71 | RING/U-box superfamily protein |
| NR | KEH42255.1 | 6.43E-159 | RING/U-box protein [Medicago truncatula] |
| Swissprot | tr|F4JKK0|SUD1_ARATH | 9.00E-07 | Probable E3 ubiquitin ligase SUD1 |
| trEMBL | tr|A0A072VVZ1|A0A072VVZ1_MEDTR | 2.00E-159 | RING/U-box protein {ECO:0000313|EMBL:KEH42255.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01544 | 412 | 2786 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001544s00035564.1 | PF12906.2 | RINGv | 83 | 130 | 4.10E-11 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.601 |
| SRR1783600 | control | 2.788 |
| SRR1783602 | moderate drought stress | 4.541 |
| SRR1811619 | moderate drought stress | 4.630 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.051 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.891 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.102 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.265 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.112 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.441 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 5.626 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 5.076 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 21.062 |
| SRR2868004 | Drought Stress(Tissue:root) | 18.345 |
| SRR2967015 | Control (Tissue:root) | 18.065 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 4.367 |
| SRR9715740 | Leave | 6.485 |
| SRR9715741 | Leave | 8.664 |
| SRR9715739 | Root | 0.735 |
| SRR9715742 | Root | 2.407 |
| SRR9715743 | Root | 1.654 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.536 |
| SRR8749028 | MeJA induced 9h | 1.450 |
| SRR8749029 | MeJA induced 9h | 0.639 |
| SRR8749030 | Uninduced | 1.814 |
| SRR8749031 | Uninduced | 0.837 |
| SRR8749032 | Uninduced | 1.920 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 8.458 |
| SRR8400027 | Control-Root | 3.953 |