Gene detail information of Glyur001544s00035565.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G03150.1 | 7.00E-88 | C2H2-like zinc finger protein |
| NR | KHN48306.1 | 0 | Zinc finger protein JACKDAW [Glycine soja] |
| Swissprot | tr|Q700D2|IDD10_ARATH | 1.00E-137 | Zinc finger protein JACKDAW |
| trEMBL | tr|K7LZN2|K7LZN2_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA13G20231.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01544 | 21356 | 24293 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | C2H2 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001544s00035565.1 | PF00096.21 | zf-C2H2 | 69 | 91 | 0.0047 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 16.027 |
| SRR1783600 | control | 16.544 |
| SRR1783602 | moderate drought stress | 18.887 |
| SRR1811619 | moderate drought stress | 18.478 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 12.542 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 11.994 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.343 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.329 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 10.185 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 10.252 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.454 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.544 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 7.518 |
| SRR2868004 | Drought Stress(Tissue:root) | 6.742 |
| SRR2967015 | Control (Tissue:root) | 7.138 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 3.375 |
| SRR9715740 | Leave | 2.959 |
| SRR9715741 | Leave | 4.015 |
| SRR9715739 | Root | 6.648 |
| SRR9715742 | Root | 12.746 |
| SRR9715743 | Root | 11.541 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.015 |
| SRR8749028 | MeJA induced 9h | 0.014 |
| SRR8749029 | MeJA induced 9h | 0.031 |
| SRR8749030 | Uninduced | 0.007 |
| SRR8749031 | Uninduced | 0.016 |
| SRR8749032 | Uninduced | 0.012 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 4.887 |
| SRR8400027 | Control-Root | 8.559 |