Gene detail information of Glyur001544s00035570.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
NRXP_003521381.12.14E-30PREDICTED: DNA-binding protein S1FA3 [Glycine max]
Swissprottr|Q7XLX6|S1FA2_ORYSJ5.00E-16DNA-binding protein S1FA2
trEMBLtr|C6SX22|C6SX22_SOYBN8.00E-31Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA03G33640.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold015445878461373+


Gene family

Gene familysubfamily
Transcription Factors FamilyS1Fa-like


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

biological_process

GO:0006355  regulation of transcription, DNA-templated


cellular_component

GO:0005634  nucleus


molecular_function

GO:0003677  DNA binding

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001544s00035570.1PF04689.8S1FA26899.40E-38


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control30.292
SRR1783600control30.069
SRR1783602moderate drought stress30.204
SRR1811619moderate drought stress30.491

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain33.895
DRR006520Root Summer glycyrrhizin high producing strain32.960
DRR006521Root Winter glycyrrhizin high producing strain22.312
DRR006522Root Winter glycyrrhizin high producing strain21.774
DRR006523Root Summer glycyrrhizin low producing strain22.729
DRR006524Root Summer glycyrrhizin low producing strain22.765
DRR006525Leaf Summer glycyrrhizin high producing strain18.056
DRR006526Leaf Summer glycyrrhizin high producing strain18.065

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)41.906
SRR2868004Drought Stress(Tissue:root)33.719
SRR2967015Control (Tissue:root)32.800

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave24.512
SRR9715740Leave22.808
SRR9715741Leave22.655
SRR9715739Root18.753
SRR9715742Root25.644
SRR9715743Root22.153

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h41.475
SRR8749028MeJA induced 9h37.788
SRR8749029MeJA induced 9h38.545
SRR8749030Uninduced31.392
SRR8749031Uninduced32.728
SRR8749032Uninduced35.725

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root93.601
SRR8400027Control-Root92.338

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved