Gene detail information of Glyur001546s00030188.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G80670.1 | 1.00E-167 | Transducin/WD40 repeat-like superfamily protein |
| NR | XP_007148431.1 | 0 | hypothetical protein PHAVU_006G208000g [Phaseolus vulgaris] |
| COG | YP_007058985.1 | 4.00E-18 | WD40 repeat-containing protein [Rivularia sp. PCC 7116] |
| Swissprot | tr|Q38942|RAE1_ARATH | 0 | Protein RAE1 {ECO:0000303|PubMed:21189294} |
| trEMBL | tr|V7BTQ2|V7BTQ2_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW20425.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01546 | 42596 | 49807 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | DWD |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001546s00030188.1 | PF00400.27 | WD40 | 22 | 51 | 1.20E-05 |
| Glyur001546s00030188.1 | PF00400.27 | WD40 | 71 | 90 | 0.11 |
| Glyur001546s00030188.1 | PF00400.27 | WD40 | 104 | 133 | 4.30E-07 |
| Glyur001546s00030188.1 | PF00400.27 | WD40 | 238 | 265 | 0.0072 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 25.830 |
| SRR1783600 | control | 26.261 |
| SRR1783602 | moderate drought stress | 35.035 |
| SRR1811619 | moderate drought stress | 35.356 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 35.188 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 34.699 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 71.997 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 69.376 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 59.221 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 59.777 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 16.806 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 16.819 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 27.496 |
| SRR2868004 | Drought Stress(Tissue:root) | 31.063 |
| SRR2967015 | Control (Tissue:root) | 30.760 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 22.636 |
| SRR9715740 | Leave | 22.053 |
| SRR9715741 | Leave | 25.475 |
| SRR9715739 | Root | 19.962 |
| SRR9715742 | Root | 28.844 |
| SRR9715743 | Root | 25.707 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 28.858 |
| SRR8749028 | MeJA induced 9h | 39.705 |
| SRR8749029 | MeJA induced 9h | 30.618 |
| SRR8749030 | Uninduced | 44.831 |
| SRR8749031 | Uninduced | 50.859 |
| SRR8749032 | Uninduced | 41.073 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 53.413 |
| SRR8400027 | Control-Root | 50.205 |