Gene detail information of Glyur001546s00030189.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G13810.1 | 3.00E-146 | AGD2-like defense response protein 1 |
| NR | XP_003531555.1 | 0 | PREDICTED: aminotransferase ALD1-like [Glycine max] |
| COG | YP_004651034.1 | 5.00E-129 | LL-diaminopimelate aminotransferase [Parachlamydia acanthamoebae UV-7] |
| Swissprot | tr|Q9ZQI7|ALD1_ARATH | 2.00E-180 | Aminotransferase ALD1 |
| trEMBL | tr|I1KUE8|I1KUE8_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA08G19250.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01546 | 53902 | 58777 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K10206 | E2.6.1.83 | EC:2.6.1.83 | Biosynthesis of amino acids | map01230 |
| Lysine biosynthesis | map00300 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001546s00030189.1 | PF00155.16 | Aminotran_1_2 | 75 | 229 | 4.40E-07 |
| Glyur001546s00030189.1 | PF00155.16 | Aminotran_1_2 | 238 | 390 | 1.30E-13 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.967 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.219 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.031 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.816 |
| SRR2967015 | Control (Tissue:root) | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.000 |
| SRR9715740 | Leave | 0.051 |
| SRR9715741 | Leave | 0.106 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.121 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.002 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.091 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.008 |
| SRR8400027 | Control-Root | 0.000 |