Gene detail information of Glyur001555s00040754.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G03550.11.00E-51RING/U-box superfamily protein
NRXP_007148807.11.58E-82hypothetical protein PHAVU_005G016000g [Phaseolus vulgaris]
Swissprottr|Q9SRQ8|ATL51_ARATH2.00E-62RING-H2 finger protein ATL51
trEMBLtr|V7BS20|V7BS20_PHAVU6.00E-83Uncharacterized protein {ECO:0000313|EMBL:ESW20802.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold015552561727715+


Gene family

Gene familysubfamily
Ubiquitin FamilyRING


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

molecular_function

GO:0005515  protein binding

GO:0008270  zinc ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001555s00040754.1PF13639.1zf-RING_21541971.70E-15


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control6.218
SRR1783600control5.964
SRR1783602moderate drought stress6.550
SRR1811619moderate drought stress6.643

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain7.369
DRR006520Root Summer glycyrrhizin high producing strain6.902
DRR006521Root Winter glycyrrhizin high producing strain0.437
DRR006522Root Winter glycyrrhizin high producing strain0.521
DRR006523Root Summer glycyrrhizin low producing strain8.025
DRR006524Root Summer glycyrrhizin low producing strain7.869
DRR006525Leaf Summer glycyrrhizin high producing strain2.174
DRR006526Leaf Summer glycyrrhizin high producing strain2.916

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)6.150
SRR2868004Drought Stress(Tissue:root)5.145
SRR2967015Control (Tissue:root)6.229

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave2.299
SRR9715740Leave3.215
SRR9715741Leave2.911
SRR9715739Root3.386
SRR9715742Root7.217
SRR9715743Root6.379

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h8.082
SRR8749028MeJA induced 9h5.813
SRR8749029MeJA induced 9h4.589
SRR8749030Uninduced2.182
SRR8749031Uninduced2.855
SRR8749032Uninduced0.979

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root7.563
SRR8400027Control-Root8.892

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved