Gene detail information of Glyur001555s00040756.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G28480.1 | 1.00E-34 | Oxoglutarate/iron-dependent oxygenase |
| NR | XP_003618430.1 | 2.81E-45 | Prolyl 4-hydroxylase subunit alpha-2 [Medicago truncatula] |
| COG | YP_004753320.1 | 7.00E-12 | peptidyl prolyl 4-hydroxylase-like protein subunit alpha [Collimonas fungivorans Ter331] |
| Swissprot | tr|Q8L970|P4H7_ARATH | 2.00E-41 | Probable prolyl 4-hydroxylase 7 (Precursor) |
| trEMBL | tr|B7FKS2|B7FKS2_MEDTR | 1.00E-45 | Uncharacterized protein {ECO:0000313|EMBL:AFK35284.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01555 | 48612 | 49793 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K00472 | P4HA | EC:1.14.11.2 | Arginine and proline metabolism | map00330 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001555s00040756.1 | PF13640.1 | 2OG-FeII_Oxy_3 | 2 | 87 | 5.60E-08 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.285 |
| SRR1811619 | moderate drought stress | 0.592 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.000 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.079 |
| SRR2967015 | Control (Tissue:root) | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.000 |
| SRR9715740 | Leave | 0.000 |
| SRR9715741 | Leave | 0.000 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.361 |
| SRR8749028 | MeJA induced 9h | 0.204 |
| SRR8749029 | MeJA induced 9h | 0.654 |
| SRR8749030 | Uninduced | 1.187 |
| SRR8749031 | Uninduced | 1.956 |
| SRR8749032 | Uninduced | 3.163 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.178 |
| SRR8400027 | Control-Root | 0.246 |